Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333C05f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    26   3.0  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   6.8  
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    25   6.8  
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   6.8  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    25   9.0  

>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = +3

Query: 105  FRLSLRVARN-YGFNFFLF--CLQHGESQTSFRIFRSFVTNEKCIKTQLLIE 251
            F+ ++  A N Y FNFFLF  C Q     ++ + FR+ V     I T++L E
Sbjct: 1490 FQDNINYASNRYSFNFFLFSVCFQSLLIPSTLQGFRNPVFRIMRIMTEVLTE 1541


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
            I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
 Frame = +3

Query: 162  LQHGESQTSFRIFRSFVTNEKCIKTQLLIENNSLISTSHLEVYGKIITNNK--CYILCIM 335
            + HGE +  ++ FR++V     +    L+     I  S  ++ G  I+NN+   Y+  ++
Sbjct: 778  INHGEQEDFYKNFRTYVVLTWILSNLFLVG----IVLSIPKINGISISNNETSAYLSFLL 833

Query: 336  YSL*MFKMNE*KFFVCFF*LSI 401
            +S+  F +   +F  C F L I
Sbjct: 834  WSVVAFSVF--RFIGCIFYLFI 853


>SPBC19C7.08c |||leucine carboxyl
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 681

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 406 FKMDN*KKHTKNFHSF 359
           F +D  + HTKN+HSF
Sbjct: 147 FDLDGTEIHTKNYHSF 162


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
 Frame = +3

Query: 135 YGFNFFLF------CLQHGESQTSFRIFRSFVTNEKCIKTQLLIENNSLISTSHL 281
           Y  N FLF      C + G+S+   R  R+ + NE     Q  +   S+I  SHL
Sbjct: 290 YPKNTFLFEVMARHCCEIGQSRFGARAIRACLENENATFEQQALVVASIIINSHL 344


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1150

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 144  NFFLFCLQHGESQTSFRIFRSFV 212
            N F   +QH ES+ SF   RSFV
Sbjct: 969  NEFSEFIQHLESEVSFNSLRSFV 991


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,860,914
Number of Sequences: 5004
Number of extensions: 33080
Number of successful extensions: 66
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)