Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333C04f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa...    28   0.73 
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    26   3.0  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   6.8  
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    25   6.8  
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha...    25   9.0  
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    25   9.0  

>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 669

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 84  KHDTKPLIISVPNSNYPKNNDLPIPENSELYEDAV 188
           ++D+  L IS    N P+ ND+P+  N + Y+  +
Sbjct: 382 RYDSVDLYISNDKRNLPEYNDVPVVINQDCYDKLI 416


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +3

Query: 111 SVPNSNYPKNNDLPIPENSELYEDAVAQTSN-QQFEEAGFNSHNHAS 248
           SVP+S   K +  P+    ++  D   +TSN      +  N H  +S
Sbjct: 116 SVPSSTETKASPTPLESKPQIVSDTTTETSNGTSRRRSSHNQHEDSS 162


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
 Frame = +3

Query: 102 LIISVPNSNYPKNNDLPIPENSELYEDAVAQTSNQQFEEA--GFNSHNHASSIN 257
           LI+ V NSN P     P+  NS       +  SN+    A    N +   +++N
Sbjct: 389 LILRVQNSNMPPPAPRPVTNNSSNNNTNQSNASNENSPNAPSAANDNTETTTVN 442


>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +3

Query: 33  HKPKHFQSAYSYHKQWEKHDTKPLIISVPNSNYPKNNDLPIPEN 164
           HK + F+    +  +W  H     I S+P  N   N +L   EN
Sbjct: 368 HKLRAFRELLIHFPKWRGHVVLIQITSLPVGNNYSNEELKKTEN 411


>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/54 (24%), Positives = 28/54 (51%)
 Frame = +3

Query: 90  DTKPLIISVPNSNYPKNNDLPIPENSELYEDAVAQTSNQQFEEAGFNSHNHASS 251
           ++ P++  V N N+   N L   ENS+ ++  + +  NQ+ ++    +  +A S
Sbjct: 266 NSNPIMCMVCNKNFRSQNQLENHENSKKHKKNL-RKMNQEIKKHAKEAQKNAES 318


>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
           Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 438 VRSQVDSDYDATAAQTLTSNANLLD 512
           +R   D DYD+ A   + SN + LD
Sbjct: 403 IRVSSDKDYDSYACHEVVSNPSTLD 427


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,877,107
Number of Sequences: 5004
Number of extensions: 33464
Number of successful extensions: 89
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)