Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333C04f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1216 - 25344638-25345159,25346011-25346511                       27   6.9  
06_03_1312 - 29246828-29246899,29247011-29247058,29247138-292472...    27   6.9  
09_02_0288 + 6936867-6936879,6936965-6937038,6937445-6937588,693...    27   9.1  
06_03_0933 + 26067109-26067232,26067334-26067486,26068929-260692...    27   9.1  

>08_02_1216 - 25344638-25345159,25346011-25346511
          Length = 340

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +3

Query: 87  HDTKPLIISVPNSNYPKNNDLPIPENSELYEDAVAQTSNQQFEEAGFNSHNHASSINS 260
           HD  P+    P S  P ++DLP   +  L + + A + N      GF   N  ++ NS
Sbjct: 209 HDLPPVPFPNP-SLVPFHHDLPTSFHPPLLQHSHANSKNSSSNNGGFVFPNEPNTTNS 265


>06_03_1312 -
           29246828-29246899,29247011-29247058,29247138-29247215,
           29247304-29247360,29247597-29247662,29247750-29247839,
           29248136-29248213,29248318-29248422,29248534-29248669,
           29248778-29248853,29248973-29249177,29249289-29249501,
           29250073-29250795
          Length = 648

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 411 GDPYVIQPSVRSQVDSDYDATAAQTLTSNANLLDSQ 518
           GDP  ++ +V       Y ATA  T+T + N +D+Q
Sbjct: 267 GDPSTVKSAVSGCSKIIYCATARSTITGDLNRVDNQ 302


>09_02_0288 +
           6936867-6936879,6936965-6937038,6937445-6937588,
           6937754-6937958,6938552-6938852,6938952-6939150,
           6939393-6939477,6939554-6939595,6939676-6939724,
           6939872-6939941,6940296-6940301
          Length = 395

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = +3

Query: 21  DTSVHKPKHFQSAYS-YHKQWEKHDTKPLIISVPNSNYPKNNDLPIPENSELYEDAVAQT 197
           D S H+P     AYS +    E  D   + +S+      K+ D     NSEL +D   ++
Sbjct: 168 DDSSHRPVVRCKAYSMFDSCSEDEDNMSVPVSLAKKENTKDVDETKYPNSELNDDTTKKS 227

Query: 198 SNQQFEEAGFNSHNHA 245
           +  +  +    S +HA
Sbjct: 228 NGAKKRKGDAISQDHA 243


>06_03_0933 +
           26067109-26067232,26067334-26067486,26068929-26069279,
           26069375-26069451,26069665-26070982,26071948-26072009,
           26072253-26072309
          Length = 713

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +3

Query: 111 SVPNSNYP--KNNDLPIPENSELYEDAVAQTSNQQFEEAGFNSHNHASSINSDY 266
           SVP + +P   N +   P N   +     + +NQ   +   +S NH S+I +DY
Sbjct: 456 SVPANQFPVQSNGEFLAPTNQ--FPVQYPEVNNQPLVQMNQSSTNHFSTIGNDY 507


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,172,878
Number of Sequences: 37544
Number of extensions: 178565
Number of successful extensions: 458
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)