Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333C04f
         (521 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC016305-1|AAH16305.1|  546|Homo sapiens Unknown (protein for IM...    31   1.9  
AY596971-1|AAT49272.1| 2083|Homo sapiens tuberin-like protein 1 ...    31   1.9  
AY596970-1|AAT49271.1| 2036|Homo sapiens tuberin-like protein 1 ...    31   1.9  
AK022988-1|BAB14349.1|  452|Homo sapiens protein ( Homo sapiens ...    31   1.9  
AB020691-1|BAA74907.1|  943|Homo sapiens KIAA0884 protein protein.     31   1.9  
U13695-1|AAA63922.1|  932|Homo sapiens hPMS1 protein.                  31   3.2  
BC096332-1|AAH96332.1|  920|Homo sapiens PMS1 protein protein.         31   3.2  
BC096331-1|AAH96331.1|  669|Homo sapiens PMS1 protein protein.         31   3.2  
BC096330-1|AAH96330.1|  920|Homo sapiens PMS1 protein protein.         31   3.2  
AY540751-1|ABB04020.1|  659|Homo sapiens rhabdomyosarcoma antige...    31   3.2  
AY540750-1|ABB04019.1|  584|Homo sapiens rhabdomyosarcoma antige...    31   3.2  
AY267352-1|AAO89079.1|  932|Homo sapiens PMS1 postmeiotic segreg...    31   3.2  
AB102875-1|BAD89404.1|  893|Homo sapiens PMS1 nirs variant 7 pro...    31   3.2  
AB102872-1|BAD89401.1|  555|Homo sapiens PMS1 nirs variant 4 pro...    31   3.2  
AB102870-1|BAD89399.1|  770|Homo sapiens PMS1 nirs variant 2 pro...    31   3.2  
AB102869-1|BAD89398.1|  667|Homo sapiens PMS1 nirs variant 1 pro...    31   3.2  
AK125999-1|BAC86386.1| 1014|Homo sapiens protein ( Homo sapiens ...    30   4.3  
AC004886-1|AAD21789.2|  786|Homo sapiens unknown protein.              30   4.3  
AB011131-1|BAA25485.1| 1212|Homo sapiens KIAA0559 protein protein.     30   4.3  
AB065632-1|BAC05858.1|  312|Homo sapiens seven transmembrane hel...    29   9.9  

>BC016305-1|AAH16305.1|  546|Homo sapiens Unknown (protein for
           IMAGE:4076117) protein.
          Length = 546

 Score = 31.5 bits (68), Expect = 1.9
 Identities = 15/58 (25%), Positives = 32/58 (55%)
 Frame = +3

Query: 69  HKQWEKHDTKPLIISVPNSNYPKNNDLPIPENSELYEDAVAQTSNQQFEEAGFNSHNH 242
           +++W + + KPL +  P      ++DLP  EN   ++ ++ +   ++ EE G N+ +H
Sbjct: 281 YQEWIQQEEKPLFMQEPEEIVITSSDLPCIENVTDHDISMEEGEKRE-EENGTNTADH 337


>AY596971-1|AAT49272.1| 2083|Homo sapiens tuberin-like protein 1
           isoform 2 protein.
          Length = 2083

 Score = 31.5 bits (68), Expect = 1.9
 Identities = 15/58 (25%), Positives = 32/58 (55%)
 Frame = +3

Query: 69  HKQWEKHDTKPLIISVPNSNYPKNNDLPIPENSELYEDAVAQTSNQQFEEAGFNSHNH 242
           +++W + + KPL +  P      ++DLP  EN   ++ ++ +   ++ EE G N+ +H
Sbjct: 436 YQEWIQQEEKPLFMQEPEEIVITSSDLPCIENVTDHDISMEEGEKRE-EENGTNTADH 492


>AY596970-1|AAT49271.1| 2036|Homo sapiens tuberin-like protein 1
           isoform 1 protein.
          Length = 2036

 Score = 31.5 bits (68), Expect = 1.9
 Identities = 15/58 (25%), Positives = 32/58 (55%)
 Frame = +3

Query: 69  HKQWEKHDTKPLIISVPNSNYPKNNDLPIPENSELYEDAVAQTSNQQFEEAGFNSHNH 242
           +++W + + KPL +  P      ++DLP  EN   ++ ++ +   ++ EE G N+ +H
Sbjct: 436 YQEWIQQEEKPLFMQEPEEIVITSSDLPCIENVTDHDISMEEGEKRE-EENGTNTADH 492


>AK022988-1|BAB14349.1|  452|Homo sapiens protein ( Homo sapiens
           cDNA FLJ12926 fis, clone NT2RP2004732, weakly similar to
           NEUROFILAMENT TRIPLET M PROTEIN. ).
          Length = 452

 Score = 31.5 bits (68), Expect = 1.9
 Identities = 15/58 (25%), Positives = 32/58 (55%)
 Frame = +3

Query: 69  HKQWEKHDTKPLIISVPNSNYPKNNDLPIPENSELYEDAVAQTSNQQFEEAGFNSHNH 242
           +++W + + KPL +  P      ++DLP  EN   ++ ++ +   ++ EE G N+ +H
Sbjct: 165 YQEWIQQEEKPLFMQEPEEIVITSSDLPCIENVTDHDISMEEGEKRE-EENGTNTADH 221


>AB020691-1|BAA74907.1|  943|Homo sapiens KIAA0884 protein protein.
          Length = 943

 Score = 31.5 bits (68), Expect = 1.9
 Identities = 15/58 (25%), Positives = 32/58 (55%)
 Frame = +3

Query: 69  HKQWEKHDTKPLIISVPNSNYPKNNDLPIPENSELYEDAVAQTSNQQFEEAGFNSHNH 242
           +++W + + KPL +  P      ++DLP  EN   ++ ++ +   ++ EE G N+ +H
Sbjct: 275 YQEWIQQEEKPLFMQEPEEIVITSSDLPCIENVTDHDISMEEGEKRE-EENGTNTADH 331


>U13695-1|AAA63922.1|  932|Homo sapiens hPMS1 protein.
          Length = 932

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +3

Query: 96  KPLIISVPNSNYP---KNNDLPIPENSELYEDAVAQTSN 203
           +P+ I VP  + P    NN+ PIPE   L ED+  + SN
Sbjct: 513 EPVKILVPEKSLPCKVSNNNYPIPEQMNLNEDSCNKKSN 551


>BC096332-1|AAH96332.1|  920|Homo sapiens PMS1 protein protein.
          Length = 920

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +3

Query: 96  KPLIISVPNSNYP---KNNDLPIPENSELYEDAVAQTSN 203
           +P+ I VP  + P    NN+ PIPE   L ED+  + SN
Sbjct: 513 EPVKILVPEKSLPCKVSNNNYPIPEQMNLNEDSCNKKSN 551


>BC096331-1|AAH96331.1|  669|Homo sapiens PMS1 protein protein.
          Length = 669

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +3

Query: 96  KPLIISVPNSNYP---KNNDLPIPENSELYEDAVAQTSN 203
           +P+ I VP  + P    NN+ PIPE   L ED+  + SN
Sbjct: 513 EPVKILVPEKSLPCKVSNNNYPIPEQMNLNEDSCNKKSN 551


>BC096330-1|AAH96330.1|  920|Homo sapiens PMS1 protein protein.
          Length = 920

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +3

Query: 96  KPLIISVPNSNYP---KNNDLPIPENSELYEDAVAQTSN 203
           +P+ I VP  + P    NN+ PIPE   L ED+  + SN
Sbjct: 513 EPVKILVPEKSLPCKVSNNNYPIPEQMNLNEDSCNKKSN 551


>AY540751-1|ABB04020.1|  659|Homo sapiens rhabdomyosarcoma antigen
           MU-RMS-40.10E protein.
          Length = 659

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +3

Query: 96  KPLIISVPNSNYP---KNNDLPIPENSELYEDAVAQTSN 203
           +P+ I VP  + P    NN+ PIPE   L ED+  + SN
Sbjct: 474 EPVKILVPEKSLPCKVSNNNYPIPEQMNLNEDSCNKKSN 512


>AY540750-1|ABB04019.1|  584|Homo sapiens rhabdomyosarcoma antigen
           MU-RMS-40.10B protein.
          Length = 584

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +3

Query: 96  KPLIISVPNSNYP---KNNDLPIPENSELYEDAVAQTSN 203
           +P+ I VP  + P    NN+ PIPE   L ED+  + SN
Sbjct: 352 EPVKILVPEKSLPCKVSNNNYPIPEQMNLNEDSCNKKSN 390


>AY267352-1|AAO89079.1|  932|Homo sapiens PMS1 postmeiotic
           segregation increased 1 (S. cerevisiae) protein.
          Length = 932

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +3

Query: 96  KPLIISVPNSNYP---KNNDLPIPENSELYEDAVAQTSN 203
           +P+ I VP  + P    NN+ PIPE   L ED+  + SN
Sbjct: 513 EPVKILVPEKSLPCKVSNNNYPIPEQMNLNEDSCNKKSN 551


>AB102875-1|BAD89404.1|  893|Homo sapiens PMS1 nirs variant 7
           protein.
          Length = 893

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +3

Query: 96  KPLIISVPNSNYP---KNNDLPIPENSELYEDAVAQTSN 203
           +P+ I VP  + P    NN+ PIPE   L ED+  + SN
Sbjct: 474 EPVKILVPEKSLPCKVSNNNYPIPEQMNLNEDSCNKKSN 512


>AB102872-1|BAD89401.1|  555|Homo sapiens PMS1 nirs variant 4
           protein.
          Length = 555

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +3

Query: 96  KPLIISVPNSNYP---KNNDLPIPENSELYEDAVAQTSN 203
           +P+ I VP  + P    NN+ PIPE   L ED+  + SN
Sbjct: 298 EPVKILVPEKSLPCKVSNNNYPIPEQMNLNEDSCNKKSN 336


>AB102870-1|BAD89399.1|  770|Homo sapiens PMS1 nirs variant 2
           protein.
          Length = 770

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +3

Query: 96  KPLIISVPNSNYP---KNNDLPIPENSELYEDAVAQTSN 203
           +P+ I VP  + P    NN+ PIPE   L ED+  + SN
Sbjct: 513 EPVKILVPEKSLPCKVSNNNYPIPEQMNLNEDSCNKKSN 551


>AB102869-1|BAD89398.1|  667|Homo sapiens PMS1 nirs variant 1
           protein.
          Length = 667

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +3

Query: 96  KPLIISVPNSNYP---KNNDLPIPENSELYEDAVAQTSN 203
           +P+ I VP  + P    NN+ PIPE   L ED+  + SN
Sbjct: 474 EPVKILVPEKSLPCKVSNNNYPIPEQMNLNEDSCNKKSN 512


>AK125999-1|BAC86386.1| 1014|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44011 fis, clone TESTI4024420, highly  similar
           to Rattus norvegicus presynaptic cytomatrix protein
           (Pclo). ).
          Length = 1014

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +3

Query: 12  TRIDTSVHKPKHFQSAYSYHKQWEKHDTKPLIISVPNSNY-PKNNDLPIPENS 167
           T+  TS  +  HF+    YH+Q   + T+P   +V   ++ P+    P P+ S
Sbjct: 414 TQAPTSYTQQSHFEQQTLYHQQVSPYQTQPTFQAVATMSFTPQVQPTPTPQPS 466


>AC004886-1|AAD21789.2|  786|Homo sapiens unknown protein.
          Length = 786

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +3

Query: 12  TRIDTSVHKPKHFQSAYSYHKQWEKHDTKPLIISVPNSNY-PKNNDLPIPENS 167
           T+  TS  +  HF+    YH+Q   + T+P   +V   ++ P+    P P+ S
Sbjct: 174 TQAPTSYTQQSHFEQQTLYHQQVSPYQTQPTFQAVATMSFTPQVQPTPTPQPS 226


>AB011131-1|BAA25485.1| 1212|Homo sapiens KIAA0559 protein protein.
          Length = 1212

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +3

Query: 12  TRIDTSVHKPKHFQSAYSYHKQWEKHDTKPLIISVPNSNY-PKNNDLPIPENS 167
           T+  TS  +  HF+    YH+Q   + T+P   +V   ++ P+    P P+ S
Sbjct: 174 TQAPTSYTQQSHFEQQTLYHQQVSPYQTQPTFQAVATMSFTPQVQPTPTPQPS 226


>AB065632-1|BAC05858.1|  312|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 312

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 6   FGTRIDTSVHKPKH-FQSAYSYHKQWEKHDTKPLIISV 116
           F  R+DT +H P + F S +S+ + W    T P ++S+
Sbjct: 44  FAVRVDTRLHNPMYNFISIFSFLEIWYTTATIPKMLSI 81


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,739,105
Number of Sequences: 237096
Number of extensions: 1003734
Number of successful extensions: 1859
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1859
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)