Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333C03f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0560 - 4532398-4532724,4532975-4533235,4533670-4533855,453...    29   2.3  
03_05_1112 + 30488678-30488806,30489047-30489228,30489310-304895...    29   2.3  
03_05_0688 + 26762668-26762893,26763027-26763101,26763865-267640...    28   4.0  
02_05_0455 - 29154374-29155136,29155257-29156455,29156904-291570...    27   9.1  

>12_01_0560 -
           4532398-4532724,4532975-4533235,4533670-4533855,
           4533922-4533936,4533941-4534246,4535032-4535135,
           4535669-4535801
          Length = 443

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +1

Query: 100 DIANAKKYVCLFKKNNRLIYHLNIAFCDNKIYL 198
           D+AN     C++ ++N + Y++ I+ C  KI+L
Sbjct: 300 DLANVVSSACIWLQDNNVPYNVLISDCGKKIFL 332


>03_05_1112 +
           30488678-30488806,30489047-30489228,30489310-30489505,
           30490095-30491117
          Length = 509

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 154 IYHLNIAFCDNKIYLTDN*DDLSFFKSIFFCSCHRRPHV 270
           I+ L   FC + I    N + L+F   +  CS HR  H+
Sbjct: 339 IWDLQSGFCKSTIMSGSNANSLAFIDGVTLCSGHRDGHL 377


>03_05_0688 +
           26762668-26762893,26763027-26763101,26763865-26764032,
           26764983-26765114,26765538-26765677,26765840-26765908,
           26766325-26766435,26766854-26766973,26768223-26768324,
           26769608-26769778,26769865-26769944,26770119-26770182
          Length = 485

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -2

Query: 421 TIII*LSGRA*LNTARVDATFFLHECNVIEIAFLPHIITTTCGLP 287
           T+ I L  RA +  ++VDA  F +   V  +  LP++I   C  P
Sbjct: 237 TVQILLEHRANIQRSQVDAKSFRNRVQVFYVPALPNVILPDCYTP 281


>02_05_0455 -
           29154374-29155136,29155257-29156455,29156904-29157011,
           29157129-29157314,29157761-29157859,29159613-29159773,
           29160856-29160913
          Length = 857

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 92  LTKILRMRKNMYVYLKKITASYTI*TLHSVIIKYISQTIR 211
           ++ IL   KN Y YL +    Y++ +LH+V +  I+  +R
Sbjct: 431 ISDILPPSKNAYSYLPEQLHGYSMSSLHNVSVPLIAGKVR 470


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,576,816
Number of Sequences: 37544
Number of extensions: 205376
Number of successful extensions: 422
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)