Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333C03f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ132700-1|CAA10736.1|  952|Caenorhabditis elegans centaurin gam...    31   0.66 
AC087079-5|ABC48240.1|  367|Caenorhabditis elegans Hypothetical ...    31   0.66 
AC087079-4|ABC48239.1|  370|Caenorhabditis elegans Hypothetical ...    31   0.66 
Z92973-6|CAI79258.1|  440|Caenorhabditis elegans Hypothetical pr...    30   1.2  

>AJ132700-1|CAA10736.1|  952|Caenorhabditis elegans centaurin gamma
           1A protein.
          Length = 952

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 115 KKYVCLFKKNNRLIYHLNI 171
           KKYVCL+    RL YH N+
Sbjct: 476 KKYVCLYSDGRRLTYHTNL 494


>AC087079-5|ABC48240.1|  367|Caenorhabditis elegans Hypothetical
           protein Y37E3.5b protein.
          Length = 367

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 220 SFFKSIFFCSCHRRPHVPSTVNLG 291
           S+F++IF C CHR P +   + LG
Sbjct: 5   SWFETIFCCCCHRTPIIRREIKLG 28


>AC087079-4|ABC48239.1|  370|Caenorhabditis elegans Hypothetical
           protein Y37E3.5a protein.
          Length = 370

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 220 SFFKSIFFCSCHRRPHVPSTVNLG 291
           S+F++IF C CHR P +   + LG
Sbjct: 5   SWFETIFCCCCHRTPIIRREIKLG 28


>Z92973-6|CAI79258.1|  440|Caenorhabditis elegans Hypothetical
           protein Y6G8.5 protein.
          Length = 440

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 226 RSLNHPNCL*DIFYYHRMQCLN 161
           R LN+P C+   F Y+ MQCLN
Sbjct: 338 RCLNNPACMSSEFRYNSMQCLN 359


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,658,568
Number of Sequences: 27780
Number of extensions: 206784
Number of successful extensions: 449
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)