Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333B12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc...    27   1.7  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    27   2.2  
SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom...    26   3.9  
SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr 1||...    26   3.9  
SPBC1711.04 |||methylenetetrahydrofolate reductase |Schizosaccha...    25   6.8  
SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces pomb...    25   6.8  

>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
           Pms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 794

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 18/50 (36%), Positives = 23/50 (46%)
 Frame = -2

Query: 337 QSRTTDRYLRFEELINCL*LGVHCDIIRHDK*ITNFNFLFIKVHTCDDSN 188
           QSR  D   +F + IN    GV  DI+R D  +  F+     VH   D N
Sbjct: 546 QSRPLDGLNKFSKKINISLSGVQKDIVRSDA-LLKFSNKIGVVHDISDEN 594


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +2

Query: 206 VNLNEQEIKICNLFVMSNYIAVHTKL*AIN*FFKP*IPI 322
           ++LNE  + IC+  V S  IAV T+   +    KP IPI
Sbjct: 613 IDLNEISVSICDFVVASEKIAVSTRRSDV----KPNIPI 647


>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 75  RFNLKYENIKVCGWRKSMKI 16
           R++L YE IK  GWR  + +
Sbjct: 334 RYSLNYEKIKSLGWRPQIPL 353


>SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 335

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 404 SCGPLSILSALDAIRLYSKCVSYNF 478
           S GPL +L  L  +R  +KCV  +F
Sbjct: 222 SNGPLEVLEILSFLRCNAKCVQNSF 246


>SPBC1711.04 |||methylenetetrahydrofolate reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 320

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +2

Query: 407 CGPLSILSALDAIRLYSKCVSYNFGTELF 493
           C PL+I+  L+ + +Y+K +  N+G  L+
Sbjct: 152 CTPLAIVKILEYLGVYNKII--NYGNRLY 178


>SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -1

Query: 482 FRNCRIHTCY 453
           F+NC+ HTCY
Sbjct: 6   FQNCKTHTCY 15


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,062,189
Number of Sequences: 5004
Number of extensions: 41363
Number of successful extensions: 95
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)