Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333B12f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_1050 - 10649434-10651917                                         29   3.0  
03_04_0122 + 17465804-17465893,17466028-17466147,17466287-174663...    27   6.9  

>08_01_1050 - 10649434-10651917
          Length = 827

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
 Frame = -3

Query: 237 QILISCSLRFTRVMILILFASSIVGTTQDLNSIGLFLEIVHVFNRQ*-----LYLKLIL- 76
           QI    S + +R+ +L L  ++I G   DL+SI L +  + V N        L  KL+  
Sbjct: 312 QIPRELSSQLSRLKVLDLSRNNISGVVPDLSSIRLQVLDLSVNNLTGEIPVALVKKLVSM 371

Query: 75  -RFNLKYENIKVC 40
            RFN  Y N+ VC
Sbjct: 372 ERFNFSYNNLTVC 384


>03_04_0122 +
           17465804-17465893,17466028-17466147,17466287-17466317,
           17466978-17467153,17468051-17468142,17468259-17468340,
           17468498-17468566,17468655-17468759,17471246-17471342,
           17471438-17471676,17472191-17472949,17473079-17473297
          Length = 692

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -3

Query: 249 TNKLQILISCSLRFTRVMILILFASSIVGTTQDLNSIG 136
           T+++  ++  SLR     +L+ FA  IV  T+D +SIG
Sbjct: 4   THQIIKVMRLSLRALAPHLLLAFAEIIVARTEDFSSIG 41


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,801,290
Number of Sequences: 37544
Number of extensions: 214559
Number of successful extensions: 398
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)