Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333B11f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.01c |apc13|SPBC9B6.12c|anaphase-promoting complex subu...    27   1.3  
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha...    25   9.0  
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch...    25   9.0  
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar...    25   9.0  
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha...    25   9.0  

>SPBC28E12.01c |apc13|SPBC9B6.12c|anaphase-promoting complex subunit
           Apc13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 135

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +1

Query: 118 IEAVAEHCNPEASDEMSFEHNAAQ--IMKN 201
           +E   EH  P   DEM+ +H++A   +MKN
Sbjct: 32  VEVRVEHLPPVTEDEMTIQHSSANLILMKN 61


>SPBC1348.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 53  EQACRANNYRRTIN*TKFLFCSSKL 127
           E A +A  +RR +N   F+FC+S +
Sbjct: 260 ENASKARFFRRMLNAFIFIFCASPM 284


>SPBPB2B2.19c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 53  EQACRANNYRRTIN*TKFLFCSSKL 127
           E A +A  +RR +N   F+FC+S +
Sbjct: 260 ENASKARFFRRMLNAFIFIFCASPM 284


>SPAC977.01 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1||Partial|Manual
          Length = 316

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 53  EQACRANNYRRTIN*TKFLFCSSKL 127
           E A +A  +RR +N   F+FC+S +
Sbjct: 232 ENASKARFFRRMLNAFIFIFCASPM 256


>SPAC750.05c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 53  EQACRANNYRRTIN*TKFLFCSSKL 127
           E A +A  +RR +N   F+FC+S +
Sbjct: 260 ENASKARFFRRMLNAFIFIFCASPM 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,735,019
Number of Sequences: 5004
Number of extensions: 26723
Number of successful extensions: 51
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)