Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333B09f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79755-1|CAB02111.2|  358|Caenorhabditis elegans Hypothetical pr...   262   1e-70
AC006610-5|AAK85453.1|  373|Caenorhabditis elegans Hypothetical ...   128   3e-30
Z46242-1|CAA86325.2|  396|Caenorhabditis elegans Hypothetical pr...   125   2e-29
Z81046-1|CAB02822.1|  379|Caenorhabditis elegans Hypothetical pr...   120   6e-28
U64849-1|AAC48052.3|  936|Caenorhabditis elegans Daf-12, redunda...    29   1.5  
Z48045-5|CAD56564.1|  374|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z48045-4|CAA88102.2|  404|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AC024214-14|AAU87808.1|  644|Caenorhabditis elegans Hypothetical...    27   6.2  
Z73102-2|CAB63428.1|  341|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z73102-1|CAA97419.1|  298|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AF031843-1|AAC13679.1|  579|Caenorhabditis elegans GLY9 protein.       27   8.1  

>Z79755-1|CAB02111.2|  358|Caenorhabditis elegans Hypothetical
           protein F43G9.1 protein.
          Length = 358

 Score =  262 bits (642), Expect = 1e-70
 Identities = 126/173 (72%), Positives = 147/173 (84%), Gaps = 1/173 (0%)
 Frame = +3

Query: 6   ATRAGAAQYSTG-VRKVTLIPGHGIGPEITVAVQKIFEAAKVPIEWEEVDVTAVRGPDGK 182
           +T   + +YS+G VR+VTLIPG GIGPEI+ +VQKIFEAA  PI W+ VDVT V+G DG 
Sbjct: 11  STVGQSIRYSSGDVRRVTLIPGDGIGPEISASVQKIFEAADAPIAWDPVDVTPVKGRDGV 70

Query: 183 FGIPQKAIDSVNANKIGLKGPLMTPVGKGYRSLNLALRKEFDLYANVRPCKSLEGIKTLY 362
           F IP + I+ ++ANK+GLKGPL TP+GKG+RSLNLA+RKEF LYANVRPC+SLEG KTLY
Sbjct: 71  FRIPSRCIELMHANKVGLKGPLETPIGKGHRSLNLAVRKEFSLYANVRPCRSLEGHKTLY 130

Query: 363 DNVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLITEEASTRVAEFAFQFAREN 521
           DNVDVVTIRENTEGEYSGIEHEIV GVVQSIKLITE AS  VA FAF++AR+N
Sbjct: 131 DNVDVVTIRENTEGEYSGIEHEIVPGVVQSIKLITETASRNVASFAFEYARQN 183


>AC006610-5|AAK85453.1|  373|Caenorhabditis elegans Hypothetical
           protein C30F12.7 protein.
          Length = 373

 Score =  128 bits (308), Expect = 3e-30
 Identities = 68/174 (39%), Positives = 101/174 (58%), Gaps = 1/174 (0%)
 Frame = +3

Query: 3   PATRAGAAQYSTGVRKVTLIPGHGIGPEITVAVQKIFEAAKVPIEWEEVDVTAVRGPDGK 182
           P  R   A+Y  G   V  +PG GIGPE+   ++ IF     P+ +EEV V++    DG 
Sbjct: 23  PGHRLPLAKYG-GRHTVCALPGDGIGPEMIAHIRNIFSFCHAPVNFEEVQVSSSL-LDGD 80

Query: 183 FGIPQKAIDSVNANKIGLKGPLMTPVGKG-YRSLNLALRKEFDLYANVRPCKSLEGIKTL 359
                 AI+    N + +KG + T      + S N+ LR + DLYAN+  C ++  + T 
Sbjct: 81  MDAAMLAIER---NGVAIKGNIETKHDDPQFNSRNVELRTKLDLYANILHCVTIPTVPTR 137

Query: 360 YDNVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLITEEASTRVAEFAFQFAREN 521
           +  +D+V IRENTEGEYSG+EHE V G+V+SIK++T E   R++  AF++A+ N
Sbjct: 138 HSGIDIVLIRENTEGEYSGLEHEAVPGIVESIKIVTREKIERISRMAFEYAKAN 191


>Z46242-1|CAA86325.2|  396|Caenorhabditis elegans Hypothetical
           protein F35G12.2 protein.
          Length = 396

 Score =  125 bits (301), Expect = 2e-29
 Identities = 67/170 (39%), Positives = 105/170 (61%), Gaps = 5/170 (2%)
 Frame = +3

Query: 24  AQYSTGVRKVTLIPGHGIGPEITVAVQKIFEAAKVPIEWEEVDVTAVRGPDGKFGIPQKA 203
           A+Y  G   VT++PG GIGPE+   V++I  A + P+++E V++T+            +A
Sbjct: 46  ARYG-GRHNVTVLPGDGIGPEMLHHVERILSAVQAPVDFEVVNLTSKEDASEDLA---EA 101

Query: 204 IDSVNANKIGLKGPLMTPVGK-GYRSLNLALRKEFDLYANVRPCKSLEGIKTLYDNVDVV 380
           I ++  N + LKG + T      + S NL LR++ +LYANV  C ++  + + +  +D+V
Sbjct: 102 ITAIKRNGVALKGNIETKFDNPSFVSRNLELRRQLNLYANVLHCSTIPTVPSRHTGIDMV 161

Query: 381 TIRENTEGEYSGIEHEIVDG----VVQSIKLITEEASTRVAEFAFQFARE 518
            IRENTEGEYSG EHE V+     VV+S+K++T E S ++  FAFQFA++
Sbjct: 162 IIRENTEGEYSGNEHEAVNAPHPRVVESLKVVTREKSEQITRFAFQFAKK 211


>Z81046-1|CAB02822.1|  379|Caenorhabditis elegans Hypothetical
           protein C37E2.1 protein.
          Length = 379

 Score =  120 bits (289), Expect = 6e-28
 Identities = 65/161 (40%), Positives = 101/161 (62%), Gaps = 6/161 (3%)
 Frame = +3

Query: 48  KVTLIPGHGIGPEITVAVQKIFEAAKVPIEWEEVDVTAVRGPDGKFGIPQKAIDSVNANK 227
           KVT+IPG G+GPE+   VQ I +   +PIE+EE+ ++ V     +    + A++S+  N 
Sbjct: 44  KVTIIPGDGVGPELIYTVQDIVKQTGIPIEFEEIFLSEVHYT--RSSSIENAVESIGRNN 101

Query: 228 -IGLKGPLMTPV---GKG-YRSLNLALRKEFDLYANVRPCKSLEGIKTLYDN-VDVVTIR 389
            + LKG +        +G  + LN+ LR+  DL+ANV   K+L+GIKT +   +D V +R
Sbjct: 102 NVALKGAIEESAVLHTEGELQGLNMRLRRSLDLFANVVHIKTLDGIKTRHGKQLDFVIVR 161

Query: 390 ENTEGEYSGIEHEIVDGVVQSIKLITEEASTRVAEFAFQFA 512
           E TEGEYS +EHE+V GV++ +K+ T   + R+A+FAF +A
Sbjct: 162 EQTEGEYSSLEHELVPGVIECLKISTRTKAERIAKFAFDYA 202


>U64849-1|AAC48052.3|  936|Caenorhabditis elegans Daf-12, redundant
           with protein 1 protein.
          Length = 936

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -1

Query: 452 GLHDPVDDLVLDTGILTLGVLSDRDHVNVVV 360
           G+H+P+D ++++T +  +G    RD  + VV
Sbjct: 292 GVHEPIDTILINTDVQIIGASDSRDITSSVV 322


>Z48045-5|CAD56564.1|  374|Caenorhabditis elegans Hypothetical
           protein C41C4.7b protein.
          Length = 374

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 10/34 (29%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = -2

Query: 508 NWKANSATL---VLASSVISLMDCTTPSTISCSI 416
           NW AN   L   +++ +++  ++CTT  +I+C +
Sbjct: 75  NWNANVTVLGSQLVSGAILEALNCTTDGSITCPL 108


>Z48045-4|CAA88102.2|  404|Caenorhabditis elegans Hypothetical
           protein C41C4.7a protein.
          Length = 404

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 10/34 (29%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = -2

Query: 508 NWKANSATL---VLASSVISLMDCTTPSTISCSI 416
           NW AN   L   +++ +++  ++CTT  +I+C +
Sbjct: 75  NWNANVTVLGSQLVSGAILEALNCTTDGSITCPL 108


>AC024214-14|AAU87808.1|  644|Caenorhabditis elegans Hypothetical
           protein Y77E11A.12b protein.
          Length = 644

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +3

Query: 279 LNLALRKEFDLYANVRPCKSLEGIKTLYDNVDVVTIRENTEGEYSGIEHEIVDG 440
           LNL  R+  + Y N     S  G ++L D+  + T + N   +  G    I DG
Sbjct: 13  LNLGQRRSSEGYLNANDLLSQGGGESLLDSAGLGTSQPNLTSQRRGTNPSIFDG 66


>Z73102-2|CAB63428.1|  341|Caenorhabditis elegans Hypothetical
           protein B0035.1b protein.
          Length = 341

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 244 GPFKPILLAFTESIAFWGIPNLPSGP 167
           GP  P  + F +   F G+P +PSGP
Sbjct: 108 GPPMPTPMPFPQHFPFPGMPPMPSGP 133


>Z73102-1|CAA97419.1|  298|Caenorhabditis elegans Hypothetical
           protein B0035.1a protein.
          Length = 298

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 244 GPFKPILLAFTESIAFWGIPNLPSGP 167
           GP  P  + F +   F G+P +PSGP
Sbjct: 108 GPPMPTPMPFPQHFPFPGMPPMPSGP 133


>AF031843-1|AAC13679.1|  579|Caenorhabditis elegans GLY9 protein.
          Length = 579

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -1

Query: 518 FSGELEGELRHSRTGLLRDQLDGLHDPVDDLVL 420
           F G++    +H R GL+R +L G  + V D+++
Sbjct: 192 FGGKVRLIRKHDRHGLIRAKLAGAREAVGDIIV 224


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,959,249
Number of Sequences: 27780
Number of extensions: 222361
Number of successful extensions: 848
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)