Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333B05f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    26   3.0  
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    26   3.0  
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz...    25   5.2  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    25   6.8  
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces...    25   9.0  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    25   9.0  

>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +1

Query: 244 RTAFASTWSPLEDLSAPSAVRSSRYVASPLPLQLA 348
           R++  + +S +  L  PS+   + YVASP P+Q++
Sbjct: 42  RSSGTALYSAIASLGDPSSPWDAVYVASPGPVQIS 76


>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 232 RWPSRTAFASTWSPLEDLSAPSAV 303
           RW + ++ + TW P E+LS  SAV
Sbjct: 30  RWLNYSSRSDTWEPPENLSGCSAV 53


>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 255

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 233 GGRPALRLPVRGLHSRIFLPHRPSDLR 313
           G RP+   P   LH+R+ +P+ P +++
Sbjct: 17  GFRPSTPPPKEVLHTRVIVPNGPEEIK 43


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = +3

Query: 195 TQQFSPGRRSIW*VAVPHCVCQYVVS---TRGSFCP-IGRPIFALCGQP 329
           T++  PGRR +  +A+   VCQ + S    R  FC     P   LC +P
Sbjct: 218 TRRRGPGRRPVVALAMKCSVCQRLQSPPKNRIVFCDGCNTPFHQLCHEP 266


>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 662

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 295 MGQKDPRVETTYWQTQCGT 239
           +G+K   V  TYWQT+ G+
Sbjct: 410 VGEKRCAVADTYWQTETGS 428


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = +2

Query: 266 GLHSRIFLPHR--P-SDLRAMWPAHCHFSLLILR 358
           GL  RI  PHR  P + L A W AHC F L + R
Sbjct: 474 GLRYRI--PHRFEPFNSLGAQWCAHCGFFLPLRR 505


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,962,252
Number of Sequences: 5004
Number of extensions: 37546
Number of successful extensions: 88
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)