Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS333B05f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0317 + 8893593-8894207 29 1.7
01_02_0075 + 10873789-10873871,10873883-10874420 29 1.7
01_02_0019 + 10262685-10262909,10263014-10263076,10263155-102633... 28 4.0
03_03_0108 + 14514460-14515722 28 5.2
11_03_0002 - 8850264-8850418,8850645-8851772,8851895-8852399 27 6.9
04_01_0025 - 348326-348566,349750-350912 27 6.9
11_06_0524 + 24576782-24577268,24577402-24578517,24578658-24578797 27 9.1
11_06_0522 + 24568070-24568571,24568710-24569825,24569968-24570122 27 9.1
07_01_0347 - 2509229-2509487,2509682-2509922,2510292-2510511,251... 27 9.1
04_03_0475 - 16343083-16344213,16344394-16345380,16345467-16345571 27 9.1
03_06_0206 - 32353308-32353566,32353784-32354024,32354408-323546... 27 9.1
03_02_0261 - 6933962-6934513 27 9.1
>02_02_0317 + 8893593-8894207
Length = 204
Score = 29.5 bits (63), Expect = 1.7
Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Frame = -3
Query: 324 GHIARRSDGRWGRKILEWRPRTGKRSAGRPPTRWTDDLV----KIAGSRWMQVATDRPHW 157
G S R GR+ WRP G+ + PT W D V + +GSRW + RP
Sbjct: 70 GEAGEESGSRCGRR---WRPGGGRDTDPHSPTSWRLDPVGEAGEESGSRWGR--RWRPDP 124
Query: 156 TSVGEAYVQQW 124
S G + W
Sbjct: 125 ASDGRGAGEAW 135
>01_02_0075 + 10873789-10873871,10873883-10874420
Length = 206
Score = 29.5 bits (63), Expect = 1.7
Identities = 25/78 (32%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
Frame = -3
Query: 339 KWQWAGHIARRSDGRWGRKILE----WRPRTGKRSAGRPPTRWTDDLVKIAGSRWMQVAT 172
+W+ AG R G R+I + WR R G RP RW +AG VA
Sbjct: 81 RWRGAGSDGWRCGGGGSRRIWQAAVGWRRRRGPAVERRPTMRWRRQPPDLAGGN--GVAE 138
Query: 171 DRPHWTSVGEAYVQQWTE 118
+ T GEA +W E
Sbjct: 139 E--EGTGGGEAPDLRWGE 154
>01_02_0019 +
10262685-10262909,10263014-10263076,10263155-10263316,
10263407-10263589,10263676-10263806,10264251-10264419,
10264524-10264653,10265702-10265898
Length = 419
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = -2
Query: 292 GQKDPRVETTYWQTQCGTATYQMDRR 215
GQ+D V Y TQCG A Y +DRR
Sbjct: 182 GQEDSHVALCYL-TQCGKARYIVDRR 206
>03_03_0108 + 14514460-14515722
Length = 420
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -3
Query: 249 SAGRPPTRWTDDLVKIAGSRWMQVATDRPHWTSVGEA 139
S+ P RW D + +W +V RP SVG A
Sbjct: 339 SSSDAPRRWRLDAYSLRRRKWTRVCAARPRSGSVGVA 375
>11_03_0002 - 8850264-8850418,8850645-8851772,8851895-8852399
Length = 595
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +2
Query: 239 RPALRLPVRGLHSRIFLPHRPSDLRAMWPAHCHFSLLILRAMSATLVL 382
R +++P G + FL P MW HCHF I+ M+ ++
Sbjct: 524 RNTVQVPRGGWAAVRFLADNPG----MWYLHCHFEFHIIMGMATAFIV 567
>04_01_0025 - 348326-348566,349750-350912
Length = 467
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Frame = -3
Query: 330 WAGHIARR---SDGRWGRKILEWRPRTGKRSAG 241
WAG +A +DG WG +++++ + G+R AG
Sbjct: 323 WAGGLANHVPYADGNWGERLIDF--KDGRRYAG 353
>11_06_0524 + 24576782-24577268,24577402-24578517,24578658-24578797
Length = 580
Score = 27.1 bits (57), Expect = 9.1
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = +2
Query: 302 SDLRAMWPAHCHFSLLILRAMSATLVL 382
+D MW HCHF I+ M+ ++
Sbjct: 531 TDNPGMWYLHCHFEFHIIMGMATAFIV 557
>11_06_0522 + 24568070-24568571,24568710-24569825,24569968-24570122
Length = 590
Score = 27.1 bits (57), Expect = 9.1
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = +2
Query: 302 SDLRAMWPAHCHFSLLILRAMSATLVL 382
+D MW HCHF I+ M+ ++
Sbjct: 536 TDNPGMWYLHCHFEFHIIMGMATAFIV 562
>07_01_0347 -
2509229-2509487,2509682-2509922,2510292-2510511,
2510943-2511278,2512047-2512103,2512187-2512210
Length = 378
Score = 27.1 bits (57), Expect = 9.1
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -2
Query: 220 RRPGENCWVTLDAGGNGP 167
+ PGE C + +D GGN P
Sbjct: 110 KAPGETCHIVIDHGGNVP 127
>04_03_0475 - 16343083-16344213,16344394-16345380,16345467-16345571
Length = 740
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 141 PLQLMSSAAGPLPPASNVTQQFSPGRRSIW 230
P+ + +AGP P S ++FSP R +W
Sbjct: 190 PIPKPTPSAGPKPLGSGPFKRFSPRVRKVW 219
>03_06_0206 -
32353308-32353566,32353784-32354024,32354408-32354627,
32354981-32355316,32355632-32355688,32355787-32355810
Length = 378
Score = 27.1 bits (57), Expect = 9.1
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -2
Query: 220 RRPGENCWVTLDAGGNGP 167
+ PGE C + +D GGN P
Sbjct: 110 KAPGETCHIVIDHGGNVP 127
>03_02_0261 - 6933962-6934513
Length = 183
Score = 27.1 bits (57), Expect = 9.1
Identities = 22/72 (30%), Positives = 28/72 (38%)
Frame = -3
Query: 372 VADIARRISKLKWQWAGHIARRSDGRWGRKILEWRPRTGKRSAGRPPTRWTDDLVKIAGS 193
+AD RR + +W W RRS W R R R G G R +L ++A
Sbjct: 112 LADKRRRSWRRQWSWRRRRRRRS---WTRGGGGGRGRGGGAQGGDDARRRAAELAEVADG 168
Query: 192 RWMQVATDRPHW 157
A RP W
Sbjct: 169 AVTPFA--RPRW 178
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,242,178
Number of Sequences: 37544
Number of extensions: 318241
Number of successful extensions: 1107
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1107
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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