Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333B05f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   1.4  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    23   1.4  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   1.4  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   1.4  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   1.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   1.9  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.5  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   5.8  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    21   5.8  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   5.8  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.7  

>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = +1

Query: 223 PSGRWPSRTAFASTWSPLEDLSAPSAVRSSRYVASPLPLQLANPTG 360
           P G + S      TW P +D        S  Y  + + L L++ TG
Sbjct: 103 PPGIFKSTCKIDITWFPFDDQHCDMKFGSWTYDGNQVDLVLSSETG 148


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = +1

Query: 223 PSGRWPSRTAFASTWSPLEDLSAPSAVRSSRYVASPLPLQLANPTG 360
           P G + S      TW P +D        S  Y  + + L L++ TG
Sbjct: 103 PPGIFKSTCKIDITWFPFDDQHCDMKFGSWTYDGNQVDLVLSSETG 148


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = +1

Query: 223 PSGRWPSRTAFASTWSPLEDLSAPSAVRSSRYVASPLPLQLANPTG 360
           P G + S      TW P +D        S  Y  + + L L++ TG
Sbjct: 171 PPGIFKSTCKIDITWFPFDDQHCDMKFGSWTYDGNQVDLVLSSETG 216


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = +1

Query: 223 PSGRWPSRTAFASTWSPLEDLSAPSAVRSSRYVASPLPLQLANPTG 360
           P G + S      TW P +D        S  Y  + + L L++ TG
Sbjct: 171 PPGIFKSTCKIDITWFPFDDQHCDMKFGSWTYDGNQVDLVLSSETG 216


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 14/46 (30%), Positives = 17/46 (36%)
 Frame = +1

Query: 223 PSGRWPSRTAFASTWSPLEDLSAPSAVRSSRYVASPLPLQLANPTG 360
           P G + S      TW P +D        S  Y    L LQL +  G
Sbjct: 140 PPGIFKSTCKIDITWFPFDDQRCEMKFGSWTYDGFQLDLQLQDEAG 185


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +1

Query: 250 AFASTWSPLEDLSAPSAVRSSRYVASPLPLQLANPTG 360
           A  +TWSP +   A  A+RS +        +   PTG
Sbjct: 515 ASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTG 551


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +1

Query: 235 WPSRTAFASTWSPLEDLSAPSAVRS 309
           WP     A++W    D++   AV+S
Sbjct: 464 WPMEEEPAASWGSASDVTLDEAVKS 488


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 12/46 (26%), Positives = 18/46 (39%)
 Frame = +1

Query: 223 PSGRWPSRTAFASTWSPLEDLSAPSAVRSSRYVASPLPLQLANPTG 360
           P G + S       W P +D        S  Y  + + L L++ TG
Sbjct: 103 PPGIFKSTCKMDVAWFPFDDQHCDMKFGSWTYDGNQVDLVLSSETG 148


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 12/46 (26%), Positives = 18/46 (39%)
 Frame = +1

Query: 223 PSGRWPSRTAFASTWSPLEDLSAPSAVRSSRYVASPLPLQLANPTG 360
           P G + S       W P +D        S  Y  + + L L++ TG
Sbjct: 103 PPGIFKSTCKIDIAWFPFDDQHCDMKFGSWTYDGNQVDLVLSSETG 148


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 12/46 (26%), Positives = 18/46 (39%)
 Frame = +1

Query: 223 PSGRWPSRTAFASTWSPLEDLSAPSAVRSSRYVASPLPLQLANPTG 360
           P G + S       W P +D        S  Y  + + L L++ TG
Sbjct: 103 PPGIFKSTCKMDIAWFPFDDQHCDMKFGSWTYDGNQVDLVLSSETG 148


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 12/46 (26%), Positives = 18/46 (39%)
 Frame = +1

Query: 223 PSGRWPSRTAFASTWSPLEDLSAPSAVRSSRYVASPLPLQLANPTG 360
           P G + S       W P +D        S  Y  + + L L++ TG
Sbjct: 103 PPGIFGSTCKIDIAWFPFDDQHCDMKFGSWTYDGNQVDLVLSSETG 148


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,720
Number of Sequences: 438
Number of extensions: 2966
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)