Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS333B04f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3B8.02 |php5||CCAAT-binding factor complex subunit Php5|Schi... 55 6e-09
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa... 50 2e-07
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 30 0.18
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 30 0.24
SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces... 28 0.97
SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces pombe... 28 0.97
SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces pomb... 28 0.97
SPAC17H9.16 |tom22||mitochondrial TOM complex subunit Tom22|Schi... 27 1.3
SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyce... 27 1.3
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 27 1.7
SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54 |Sch... 27 1.7
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc... 27 2.2
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 27 2.2
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 26 3.0
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 3.0
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 26 3.9
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 26 3.9
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 26 3.9
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch... 26 3.9
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 3.9
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 5.2
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 25 5.2
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 25 5.2
SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway prote... 25 6.8
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 6.8
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom... 25 6.8
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 6.8
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 25 9.0
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ... 25 9.0
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 25 9.0
SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces p... 25 9.0
>SPBC3B8.02 |php5||CCAAT-binding factor complex subunit
Php5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 415
Score = 55.2 bits (127), Expect = 6e-09
Identities = 24/81 (29%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Frame = +1
Query: 268 EVIRSTKLPIARIKNIMKMDPDVN--IVSSDAVFLVTKATEMFLETIVKETYAFTSSNKR 441
+ +++ LP+ARIK +MK D DV ++S++A FL K +E+F+ + + N+R
Sbjct: 102 QAVKTLHLPLARIKKVMKTDDDVKNKMISAEAPFLFAKGSEIFIAELTMRAWLHAKKNQR 161
Query: 442 KVISKKDLELVIDKVDCLCFL 504
+ + + D+ + K + FL
Sbjct: 162 RTLQRSDIANAVSKSEMYDFL 182
>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 199
Score = 50.4 bits (115), Expect = 2e-07
Identities = 25/90 (27%), Positives = 50/90 (55%)
Frame = +1
Query: 250 EKKQKTEVIRSTKLPIARIKNIMKMDPDVNIVSSDAVFLVTKATEMFLETIVKETYAFTS 429
E K ++ P+ARIK IM+ D DV V+ +++KA E+F+++I++E+ T
Sbjct: 11 ETKPNPATYWKSRFPVARIKKIMQADQDVGKVAQVTPVIMSKALELFMQSIIQESCKQTR 70
Query: 430 SNKRKVISKKDLELVIDKVDCLCFLEGAMD 519
++ K ++ L+ + V+ FL+ ++
Sbjct: 71 LHQAKRVTVSHLKHAVQSVEQFDFLQDIVE 100
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 30.3 bits (65), Expect = 0.18
Identities = 14/73 (19%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = +1
Query: 79 LQNMSEEECHEDVDISDITEHSES---YLENEHLKFALTEATEADNNKLEFELNSEEQVH 249
++ ++E H+ DI D+ + + +++N HL + + ++FE+ E VH
Sbjct: 2007 IERCNKEGVHDVFDIIDLDDEKRTELLHMDNAHLAKCAEFINKYPDIDIDFEIEDSEDVH 2066
Query: 250 EKKQKTEVIRSTK 288
+++ T+
Sbjct: 2067 ANSPSVLIVQLTR 2079
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 29.9 bits (64), Expect = 0.24
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = +1
Query: 115 VDISDITEHSESYLEN--EHLKFALTEATEADNNKLE 219
VD++D+T H + L+N E L F+ E ++ D N+ E
Sbjct: 31 VDVADVTTHVDEDLDNKEEALDFSEDELSDLDENQFE 67
>SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 103
Score = 27.9 bits (59), Expect = 0.97
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +1
Query: 349 SDAVFLVTKAT-EMFLETIVKETYAFTSSNKRKVISKKDL 465
S V+ T+A ++FLE ++++ +T KRK ++ D+
Sbjct: 48 SALVYEETRAVLKLFLENVIRDAVTYTEHAKRKTVTSLDV 87
>SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 103
Score = 27.9 bits (59), Expect = 0.97
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +1
Query: 349 SDAVFLVTKAT-EMFLETIVKETYAFTSSNKRKVISKKDL 465
S V+ T+A ++FLE ++++ +T KRK ++ D+
Sbjct: 48 SALVYEETRAVLKLFLENVIRDAVTYTEHAKRKTVTSLDV 87
>SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 103
Score = 27.9 bits (59), Expect = 0.97
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +1
Query: 349 SDAVFLVTKAT-EMFLETIVKETYAFTSSNKRKVISKKDL 465
S V+ T+A ++FLE ++++ +T KRK ++ D+
Sbjct: 48 SALVYEETRAVLKLFLENVIRDAVTYTEHAKRKTVTSLDV 87
>SPAC17H9.16 |tom22||mitochondrial TOM complex subunit
Tom22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 144
Score = 27.5 bits (58), Expect = 1.3
Identities = 11/49 (22%), Positives = 28/49 (57%)
Frame = +1
Query: 109 EDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNSEEQVHEK 255
E VD +++ ++ +E + +A + E+D+++ +FE EE + ++
Sbjct: 6 EVVDETEVQNEQQTVIEKDQYIYAQEDVEESDSDESDFEGLEEETIIDR 54
>SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 295
Score = 27.5 bits (58), Expect = 1.3
Identities = 20/64 (31%), Positives = 28/64 (43%)
Frame = +1
Query: 163 EHLKFALTEATEADNNKLEFELNSEEQVHEKKQKTEVIRSTKLPIARIKNIMKMDPDVNI 342
EH K A+ A + N +E EQ+ K T+++RS IKN +K D
Sbjct: 235 EHCKSAVRSAEDELNGAIEHAKILYEQILNKDYNTDLLRSI------IKNQLKFHQDAAA 288
Query: 343 VSSD 354
SD
Sbjct: 289 ALSD 292
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 27.1 bits (57), Expect = 1.7
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = +1
Query: 286 KLPIARIKNIMKMDPDVNIVSS--DAVFLVTKATEMFLETIVKETYAFTSSNKRKVISKK 459
+ P + ++ + D N+ S D V + EM L ++ + F+ KV +
Sbjct: 1798 RTPFSGFYGMLSLLDDTNLDSEQRDIVSAARISCEMLLR-VINDLLNFSKLEAGKVTLES 1856
Query: 460 DLELVIDKVDCLC 498
DLE ++ V C C
Sbjct: 1857 DLEFSLESVVCDC 1869
>SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 384
Score = 27.1 bits (57), Expect = 1.7
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = -1
Query: 476 ITSSKSFFDITFRLFDDVNA*VSFTIVSRNISVALVTKNTASLDTIFTSGSIF 318
ITSS S F ITF + + + + + +V+ L TIF ++F
Sbjct: 262 ITSSDSLFQITFHAYKPSASFKKSALSEPDFRICVVSSQDTLLPTIFEIDALF 314
>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 26.6 bits (56), Expect = 2.2
Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 3/121 (2%)
Frame = +1
Query: 82 QNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADN---NKLEFELNSEEQVHE 252
+ +SE+ E D+ +I + LE+E + +E DN N + E+ +E +
Sbjct: 225 EKLSEQAKRERDDLKNIMQ-----LEDESVSTTSVHDSEDDNLDSNNFQLEIGTEAKSAA 279
Query: 253 KKQKTEVIRSTKLPIARIKNIMKMDPDVNIVSSDAVFLVTKATEMFLETIVKETYAFTSS 432
+ E+I+S R K +K + FLVTK E++ E + +S
Sbjct: 280 PDEPQEIIKSVSGGKRRGKRKVK---KYATTKDEEGFLVTKEEEVWESFSEDENISTGTS 336
Query: 433 N 435
N
Sbjct: 337 N 337
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 26.6 bits (56), Expect = 2.2
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Frame = +1
Query: 73 SSLQNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNSEEQVHE 252
SS N+S ++ + I+ +T++ + Y+E HL+F + L L S
Sbjct: 132 SSNPNISRKQSFIEYLIAKLTDNIQIYIERIHLRFEDNLSDLEKPYSLGLTLYSLRVTST 191
Query: 253 KKQKTEVIRST-KLPIARIKNIMKMD 327
TE + ST +P + I I+ +D
Sbjct: 192 DASFTEYLLSTDPIPSSCIHKIITVD 217
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +1
Query: 121 ISDITEHSESYLENEHLKFALTEATEADNNKLEF 222
I+ I +HS SY + + E D NKL F
Sbjct: 215 IASILQHSNSYFDQHTISSITDERDLEDKNKLPF 248
>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 26.2 bits (55), Expect = 3.0
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Frame = +1
Query: 229 NSEEQVHEKKQKTEV-IR--STKLPIARIKNIMKMD---PDVNIVSSDAVFLVTKATEMF 390
+SE+ +++ K E+ ++ ST +A +I+ MD P +I SSD FL+ + +
Sbjct: 99 DSEDDLYQMYSKFEMQVKKLSTNYGLAVAFSIVPMDDDQPSPSIFSSDESFLIVEGDDFS 158
Query: 391 LETIVKETYAFTS 429
L V+E TS
Sbjct: 159 LGNSVEEDANATS 171
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 25.8 bits (54), Expect = 3.9
Identities = 18/66 (27%), Positives = 32/66 (48%)
Frame = +1
Query: 73 SSLQNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNSEEQVHE 252
S ++ EEE E + S++++ SES E+E E +E++ E E + +
Sbjct: 83 SDSESSEEEEETESEEDSEVSDESESESESES---ESEEESESEEESDESERSGPSSFLK 139
Query: 253 KKQKTE 270
K +K E
Sbjct: 140 KPEKEE 145
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 959
Score = 25.8 bits (54), Expect = 3.9
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Frame = +1
Query: 94 EEECHEDVDISDITEHSESYL-------ENEHLKFALTEATEADNNKLEFELNSEEQVHE 252
+E+ E++D +I E S+ + +NE L+ L + E + K++ E +SEE++
Sbjct: 690 DEDDFEEIDTDEIEEQSDWEMISNQDASDNEELERKLDKVLEDADAKVKDEESSEEELMN 749
Query: 253 KKQ 261
+Q
Sbjct: 750 DEQ 752
>SPAC343.11c |msc1||multi-copy suppressor of Chk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1588
Score = 25.8 bits (54), Expect = 3.9
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +1
Query: 67 KPSSLQNMSEEECHED--VDISDITEHSESYLENEHLKFALTEATEADN 207
K SS +N S E E VD ++ HS + E EH K + + + N
Sbjct: 3 KNSSHENQSSENIIEFPYVDFEELNVHSNIFSELEHAKPSTQQQQQQQN 51
>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 747
Score = 25.8 bits (54), Expect = 3.9
Identities = 14/64 (21%), Positives = 31/64 (48%)
Frame = +1
Query: 91 SEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNSEEQVHEKKQKTE 270
SE E ++D SDI + + LE + + + + N+K + +++ + E +
Sbjct: 182 SESEASLEID-SDIKDEKQKSLEEQKIAPEIPVKQQIKNDKEALGIQAQQLLEEPVENLH 240
Query: 271 VIRS 282
+IR+
Sbjct: 241 LIRN 244
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.8 bits (54), Expect = 3.9
Identities = 20/68 (29%), Positives = 40/68 (58%)
Frame = +1
Query: 202 DNNKLEFELNSEEQVHEKKQKTEVIRSTKLPIARIKNIMKMDPDVNIVSSDAVFLVTKAT 381
+NN L+ + +S+ ++EK + ++ T L I R NI++ DP V D+++L+
Sbjct: 945 ENNDLKSKFSSD--MYEKLRG--FLKPTNLTIQR--NIIEFDPPVYRKKEDSIYLL---- 994
Query: 382 EMFLETIV 405
+M L+++V
Sbjct: 995 DMCLQSVV 1002
>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1098
Score = 25.4 bits (53), Expect = 5.2
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 1/103 (0%)
Frame = +1
Query: 196 EADNNKLEFELNSEEQVH-EKKQKTEVIRSTKLPIARIKNIMKMDPDVNIVSSDAVFLVT 372
++++ KL S E +H E E+ R+T+ I P+V V L++
Sbjct: 439 DSNSQKLLTSSTSNEYIHGEFFGGNEMERTTQ----EIVTSFAKAPNVKYVMQS---LLS 491
Query: 373 KATEMFLETIVKETYAFTSSNKRKVISKKDLELVIDKVDCLCF 501
KAT E V+ +AF K V + LE+ ID ++ F
Sbjct: 492 KATSATNENSVRAFWAFMVLLKSDVETVDSLEMYIDSLEQYSF 534
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 25.4 bits (53), Expect = 5.2
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +1
Query: 49 TLHRKYKPSSLQNMSEEECH-EDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFE 225
TL + P S QN H + + ITE S Y+ + HL++ E+ + LE+
Sbjct: 136 TLPNAHAPHS-QNRRRRSNHLNNPPEAPITEASNEYVYSFHLEYVPLESNTFSASALEYS 194
Query: 226 LN 231
N
Sbjct: 195 KN 196
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/48 (25%), Positives = 26/48 (54%)
Frame = +1
Query: 376 ATEMFLETIVKETYAFTSSNKRKVISKKDLELVIDKVDCLCFLEGAMD 519
A ++ LE I ET+ + S+ + S+ ++ + +K+D + E +D
Sbjct: 411 ADDVDLEQIAAETHGYVGSDLASLCSEAAMQQIREKMDMIDLDEDEID 458
>SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway protein
But1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 243
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 196 EADNNKLEFELNSEEQVHEKKQKTEVIRSTK 288
E D N +F +++ + VHE K T ++STK
Sbjct: 2 EIDQNLFQFPISTRDAVHE-KNCTLRVKSTK 31
>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 689
Score = 25.0 bits (52), Expect = 6.8
Identities = 33/146 (22%), Positives = 57/146 (39%), Gaps = 3/146 (2%)
Frame = +1
Query: 28 FRKRLLFTLHRKYKPSSLQNMSEEEC--HEDVDISDITEHSESYLENEHLKFALTEATEA 201
F L+ LH + +++S ++ ED +S + HS+ + + L
Sbjct: 220 FTSLLVDPLHFMFSQIVFEDLSGKKIMKFEDTAVSTASNHSKQFTKGNLLAIKYIGGLYN 279
Query: 202 DNNKLEFELNSEEQVHEKKQKTEVIRSTKLPIARIKNIMKMDP-DVNIVSSDAVFLVTKA 378
+ + N V +K V + L + KN K+ P DV D+++
Sbjct: 280 AVYLMGLKKNLLAFVENEKDDLFVAKIFLLAYSSSKNRKKIVPVDVWDAMIDSLYETIN- 338
Query: 379 TEMFLETIVKETYAFTSSNKRKVISK 456
+E KETY FT S K + +K
Sbjct: 339 ----VEETKKETYKFTRSIKTVIPNK 360
>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 703
Score = 25.0 bits (52), Expect = 6.8
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Frame = -1
Query: 518 SIAPSKKHKQSTLS----ITSSKSFFDITFRL--FDDVNA*VSFTIVSRNISVALVTKNT 357
SI+ S +H +S L+ ++ S+S+FDIT +L V I ++ + TK+
Sbjct: 16 SISESLEHSKSELNELSNVSESESYFDITKKLHALSTVVQRQQREIDNQKRDLCTKTKHI 75
Query: 356 ASLDTIFTSGSI 321
L T+ ++ +I
Sbjct: 76 EELQTLLSNANI 87
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 25.0 bits (52), Expect = 6.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 64 YKPSSLQNMSEEECHEDVDI 123
Y+PSSLQ + + H VD+
Sbjct: 314 YQPSSLQPLESRKLHSKVDV 333
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 24.6 bits (51), Expect = 9.0
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Frame = +1
Query: 73 SSLQNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADN-NKLE------FELN 231
S LQN SEE + S + ++ SY +++ LK T + KL+ ELN
Sbjct: 544 SHLQNFSEELLKKRKLFSSLFSNNVSYKKSKKLKRTHTVHDKCQKVAKLDHYIRDNIELN 603
Query: 232 SEEQVHEKKQKTEVIRSTKLPIAR 303
S+E+ H+ + T + I +
Sbjct: 604 SKEREHDCYEGTLAVPQVNTEIRK 627
>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 196 EADNNKLEFELNSEEQVHEKKQKTEVIRSTKLPIARIK 309
+ D + EF SEE +++ + TKL IAR+K
Sbjct: 371 DVDERRREFPNASEEHTNKEAYLLPHLFRTKLGIARLK 408
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 24.6 bits (51), Expect = 9.0
Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Frame = +1
Query: 61 KYKPSSLQNMSEEECHEDVDISDITEHSESYLENEHLKFALTEAT---EADNNKLEFELN 231
K K S ++ +EE + IS E +++ E + ++++ EAT NK + E+
Sbjct: 537 KAKVSEIRKAYDEELAKAKQISLDIETNKAQTEQVNREYSILEATLNALQKQNKQKGEV- 595
Query: 232 SEEQVHEKKQKTEVIRSTKLPIARIKN 312
E+ V E + ++ S+ I ++K+
Sbjct: 596 LEQVVAESEAAKNMVESSNASIQQLKS 622
>SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 161
Score = 24.6 bits (51), Expect = 9.0
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Frame = +1
Query: 91 SEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNSEEQVHEKKQ--- 261
+ E C ++ + EH LEN K + EA E E + N E++ + +Q
Sbjct: 54 ANEICEKEAKKTIAAEHIIKALENLEFKEYIAEALEVAAEHKEQQKNREKKSSKFEQSGV 113
Query: 262 -KTEVIRSTKLPIARIKNIMK 321
+ E++R + ++R + K
Sbjct: 114 SRDELLRQQEELLSRARERFK 134
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,781,317
Number of Sequences: 5004
Number of extensions: 31932
Number of successful extensions: 175
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -