Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS333B04f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132949-3|CAB61070.1| 179|Caenorhabditis elegans Hypothetical ... 72 2e-13
AF024493-10|AAK68346.1| 232|Caenorhabditis elegans C. elegans N... 54 5e-08
AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric ... 36 0.013
AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric ... 36 0.013
AF025470-4|AAB71054.1| 403|Caenorhabditis elegans Hypothetical ... 35 0.041
U00057-1|AAA50726.2| 347|Caenorhabditis elegans Hypothetical pr... 31 0.50
Z79695-4|CAB01969.3| 374|Caenorhabditis elegans Hypothetical pr... 28 3.5
Z70750-5|CAA94740.1| 123|Caenorhabditis elegans Hypothetical pr... 28 3.5
AL132898-4|CAC14407.3| 968|Caenorhabditis elegans Hypothetical ... 28 3.5
AF101316-2|AAC69230.1| 692|Caenorhabditis elegans Hypothetical ... 28 3.5
AC006661-10|AAF39887.1| 843|Caenorhabditis elegans Hypothetical... 28 3.5
Z78201-3|CAD36504.1| 1066|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z78199-3|CAB01577.2| 1066|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z78199-2|CAB54275.1| 582|Caenorhabditis elegans Hypothetical pr... 28 4.7
U40948-5|AAA81731.2| 955|Caenorhabditis elegans Hypothetical pr... 28 4.7
AF108229-2|AAF17301.1| 582|Caenorhabditis elegans VAB-8S protein. 28 4.7
AF108229-1|AAF17300.1| 1066|Caenorhabditis elegans VAB-8L protein. 28 4.7
Z83103-9|CAI79157.1| 376|Caenorhabditis elegans Hypothetical pr... 27 6.2
U40029-12|AAA81131.1| 785|Caenorhabditis elegans Temporarily as... 27 6.2
Z92789-3|CAB07220.1| 123|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z82271-3|CAB05211.1| 123|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z73102-9|CAA97413.1| 123|Caenorhabditis elegans Hypothetical pr... 27 8.1
U58750-8|AAB00648.1| 123|Caenorhabditis elegans Histone protein... 27 8.1
AL034488-12|CAD31697.1| 450|Caenorhabditis elegans Hypothetical... 27 8.1
AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical ... 27 8.1
AF098993-7|ABN43095.1| 525|Caenorhabditis elegans Hypothetical ... 27 8.1
AF098993-6|AAC67469.2| 562|Caenorhabditis elegans Hypothetical ... 27 8.1
AF078789-3|AAK68487.1| 295|Caenorhabditis elegans Hypothetical ... 27 8.1
AF078789-2|AAK21516.1| 318|Caenorhabditis elegans Hypothetical ... 27 8.1
>AL132949-3|CAB61070.1| 179|Caenorhabditis elegans Hypothetical
protein Y53F4B.3 protein.
Length = 179
Score = 72.1 bits (169), Expect = 2e-13
Identities = 32/96 (33%), Positives = 59/96 (61%)
Frame = +1
Query: 232 SEEQVHEKKQKTEVIRSTKLPIARIKNIMKMDPDVNIVSSDAVFLVTKATEMFLETIVKE 411
SEE V E ++ E + ++LP+ R+K +++M+PDV +++++A+ L+ KA E+F++ +
Sbjct: 17 SEEDVREIEEHVEELVRSQLPLGRVKKVVRMNPDVEMLNNEALQLMAKAAELFIKELSNA 76
Query: 412 TYAFTSSNKRKVISKKDLELVIDKVDCLCFLEGAMD 519
+ KRK + KD++ I K FLE A+D
Sbjct: 77 ANQNAALEKRKTVQTKDIDKAIKKTWAFAFLEDALD 112
>AF024493-10|AAK68346.1| 232|Caenorhabditis elegans C. elegans
NFYC-1 protein protein.
Length = 232
Score = 54.4 bits (125), Expect = 5e-08
Identities = 32/102 (31%), Positives = 57/102 (55%), Gaps = 11/102 (10%)
Frame = +1
Query: 232 SEEQVHEKKQK-TEVI--------RSTKLPIARIKNIMKMDPDVN--IVSSDAVFLVTKA 378
+E+ EKKQK TE+ ++ +P+AR+K IM++D DV +++SDA + +A
Sbjct: 82 TEDFWREKKQKMTEISEEDMLNKSKNMSVPMARVKKIMRIDDDVRNFMIASDAPIFMAQA 141
Query: 379 TEMFLETIVKETYAFTSSNKRKVISKKDLELVIDKVDCLCFL 504
E F+E + + + S +R+++ K D+ + K D FL
Sbjct: 142 AEFFIEEMTAMGWQYVSEARRRILQKADIASAVQKSDQFDFL 183
>AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 6, isoform a protein.
Length = 1724
Score = 36.3 bits (80), Expect = 0.013
Identities = 23/86 (26%), Positives = 45/86 (52%)
Frame = +1
Query: 70 PSSLQNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNSEEQVH 249
P ++ N+ E+ +E+ D + E E ENE A+ E ++D + E + ++EE V
Sbjct: 429 PGAIPNLDAEQ-NEEEDEEEEGEDEEEEEENEQDDVAVKEEEQSDKSDEENDGDNEENVS 487
Query: 250 EKKQKTEVIRSTKLPIARIKNIMKMD 327
+KK++ + + K +K + +MD
Sbjct: 488 KKKEEKKKEKKAK----EVKEVGRMD 509
>AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 6, isoform b protein.
Length = 1758
Score = 36.3 bits (80), Expect = 0.013
Identities = 23/86 (26%), Positives = 45/86 (52%)
Frame = +1
Query: 70 PSSLQNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNSEEQVH 249
P ++ N+ E+ +E+ D + E E ENE A+ E ++D + E + ++EE V
Sbjct: 429 PGAIPNLDAEQ-NEEEDEEEEGEDEEEEEENEQDDVAVKEEEQSDKSDEENDGDNEENVS 487
Query: 250 EKKQKTEVIRSTKLPIARIKNIMKMD 327
+KK++ + + K +K + +MD
Sbjct: 488 KKKEEKKKEKKAK----EVKEVGRMD 509
>AF025470-4|AAB71054.1| 403|Caenorhabditis elegans Hypothetical
protein W10D9.4 protein.
Length = 403
Score = 34.7 bits (76), Expect = 0.041
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Frame = +1
Query: 247 HEKKQKTEVIRSTKLPIARIKNIMK--MDPDVNIVSSDAVFLVTKATEMFLETIVKETYA 420
H K + + + LPIA + IMK MDP + + DA + F+ I E
Sbjct: 52 HPNKSQVLLDQERFLPIANVVRIMKTQMDPQAKL-AKDAKECAQECVSEFISFIASEAAE 110
Query: 421 FTSSNKRKVISKKDL 465
+ KRK I+ DL
Sbjct: 111 ICNITKRKTITADDL 125
>U00057-1|AAA50726.2| 347|Caenorhabditis elegans Hypothetical
protein T24G10.2 protein.
Length = 347
Score = 31.1 bits (67), Expect = 0.50
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +1
Query: 229 NSEEQVHEKKQKTEVIRSTKLPIARIKNIMKMDPDVNIVSSDAV 360
+ E+ EKK+KTE ++ +LP+ + K +K D D + DAV
Sbjct: 86 SDHEEGEEKKEKTEKVKKEELPV-KAKKEVKEDSDSDSGVEDAV 128
>Z79695-4|CAB01969.3| 374|Caenorhabditis elegans Hypothetical
protein F27D4.4a protein.
Length = 374
Score = 28.3 bits (60), Expect = 3.5
Identities = 17/62 (27%), Positives = 32/62 (51%)
Frame = +1
Query: 91 SEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNSEEQVHEKKQKTE 270
SE++ E V I D T ++ N++ KF + NN +L +++ +KK+K E
Sbjct: 12 SEQKRKEKV-IEDKTFGLKNKKGNKNQKFVAQVENQVRNNNTRMDLVRQQEAAKKKEKDE 70
Query: 271 VI 276
++
Sbjct: 71 LL 72
>Z70750-5|CAA94740.1| 123|Caenorhabditis elegans Hypothetical
protein C50F4.5 protein.
Length = 123
Score = 28.3 bits (60), Expect = 3.5
Identities = 20/75 (26%), Positives = 34/75 (45%)
Frame = +1
Query: 253 KKQKTEVIRSTKLPIARIKNIMKMDPDVNIVSSDAVFLVTKATEMFLETIVKETYAFTSS 432
KK+K S + I R+ + ++ PD VSS A+ ++ E I E
Sbjct: 25 KKRKHARKESYSVYIYRV--LKQVHPDTG-VSSKAMSIMNSFVNDVFERIASEASRLAHY 81
Query: 433 NKRKVISKKDLELVI 477
NKR IS ++++ +
Sbjct: 82 NKRSTISSREIQTAV 96
>AL132898-4|CAC14407.3| 968|Caenorhabditis elegans Hypothetical
protein Y59A8B.6 protein.
Length = 968
Score = 28.3 bits (60), Expect = 3.5
Identities = 26/90 (28%), Positives = 46/90 (51%)
Frame = +1
Query: 214 LEFELNSEEQVHEKKQKTEVIRSTKLPIARIKNIMKMDPDVNIVSSDAVFLVTKATEMFL 393
LE +L +++V K + ++ S KL A ++ ++ D I+ + AV + +TEM+L
Sbjct: 408 LEQDLKDKKKVLRKALE-QIPSSVKLWKAAVE--LEDPEDARILLTRAVECCSSSTEMWL 464
Query: 394 ETIVKETYAFTSSNKRKVISKKDLELVIDK 483
ETY N RKV++K + D+
Sbjct: 465 ALARLETY----ENARKVLNKAREHIPTDR 490
>AF101316-2|AAC69230.1| 692|Caenorhabditis elegans Hypothetical
protein F52F10.4 protein.
Length = 692
Score = 28.3 bits (60), Expect = 3.5
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -1
Query: 377 ALVTKNTASLDTIFTSGSIF--IMFLILAIGSFVDLI 273
A TKN DT F SIF +M +I AI S VD +
Sbjct: 166 AYCTKNEVKKDTPFWGFSIFLIVMVVIAAIASIVDYV 202
>AC006661-10|AAF39887.1| 843|Caenorhabditis elegans Hypothetical
protein H20J04.1 protein.
Length = 843
Score = 28.3 bits (60), Expect = 3.5
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +1
Query: 64 YKPSSLQNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKL 216
YK L +S + V IS + SYLE+ H + + T AD N L
Sbjct: 251 YKKVDLTRVSATQVGTGVAISPFFSNVLSYLESSHAIKFIEKLTNADKNTL 301
>Z78201-3|CAD36504.1| 1066|Caenorhabditis elegans Hypothetical
protein K12F2.2a protein.
Length = 1066
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +1
Query: 73 SSLQNMSEEECHEDVDISDITEHSESYLENEHL-KFALTEATEADNNKLE 219
+S+QN+ + + D+D+S++ + Y HL ++A+ E + NKL+
Sbjct: 644 NSVQNIGNSQSNTDMDVSEM----DVYRRASHLEEYAMQRVREIEENKLK 689
>Z78199-3|CAB01577.2| 1066|Caenorhabditis elegans Hypothetical
protein K12F2.2a protein.
Length = 1066
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +1
Query: 73 SSLQNMSEEECHEDVDISDITEHSESYLENEHL-KFALTEATEADNNKLE 219
+S+QN+ + + D+D+S++ + Y HL ++A+ E + NKL+
Sbjct: 644 NSVQNIGNSQSNTDMDVSEM----DVYRRASHLEEYAMQRVREIEENKLK 689
>Z78199-2|CAB54275.1| 582|Caenorhabditis elegans Hypothetical
protein K12F2.2b protein.
Length = 582
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +1
Query: 73 SSLQNMSEEECHEDVDISDITEHSESYLENEHL-KFALTEATEADNNKLE 219
+S+QN+ + + D+D+S++ + Y HL ++A+ E + NKL+
Sbjct: 160 NSVQNIGNSQSNTDMDVSEM----DVYRRASHLEEYAMQRVREIEENKLK 205
>U40948-5|AAA81731.2| 955|Caenorhabditis elegans Hypothetical
protein F55D10.1 protein.
Length = 955
Score = 27.9 bits (59), Expect = 4.7
Identities = 20/92 (21%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Frame = +1
Query: 184 TEATEADNNKLEFELNSEEQVHEKKQKTEVIRSTKLPIARIKNIMKMDPDVNIVSSDAVF 363
T+ A +KL E+ ++E +QK S ++ + R KN ++ + V + +
Sbjct: 631 TQQPIALTSKLALEVVPGAIINEVRQKVSPFVSQQIRLPRGKNYIEFEWIVGPIPKETKN 690
Query: 364 LVTKA-TEMFLETIVKETYAFTSSNKRKVISK 456
+TK + + + +FT SN R+ + +
Sbjct: 691 PITKEFVTRYTTEVHSKNQSFTDSNGRQAMER 722
>AF108229-2|AAF17301.1| 582|Caenorhabditis elegans VAB-8S protein.
Length = 582
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +1
Query: 73 SSLQNMSEEECHEDVDISDITEHSESYLENEHL-KFALTEATEADNNKLE 219
+S+QN+ + + D+D+S++ + Y HL ++A+ E + NKL+
Sbjct: 160 NSVQNIGNSQSNTDMDVSEM----DVYRRASHLEEYAMQRVREIEENKLK 205
>AF108229-1|AAF17300.1| 1066|Caenorhabditis elegans VAB-8L protein.
Length = 1066
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +1
Query: 73 SSLQNMSEEECHEDVDISDITEHSESYLENEHL-KFALTEATEADNNKLE 219
+S+QN+ + + D+D+S++ + Y HL ++A+ E + NKL+
Sbjct: 644 NSVQNIGNSQSNTDMDVSEM----DVYRRASHLEEYAMQRVREIEENKLK 689
>Z83103-9|CAI79157.1| 376|Caenorhabditis elegans Hypothetical
protein D1025.10 protein.
Length = 376
Score = 27.5 bits (58), Expect = 6.2
Identities = 20/70 (28%), Positives = 29/70 (41%)
Frame = +1
Query: 112 DVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNSEEQVHEKKQKTEVIRSTKL 291
D ++D+ E +E E EA E +E EE+V E K+K E +R
Sbjct: 121 DESMADVMEEINQEVEEEEEG----EAEEGQEEVVEEVEEDEEEVEEIKEKVEEVREVTP 176
Query: 292 PIARIKNIMK 321
P I + K
Sbjct: 177 PKDLINGMPK 186
>U40029-12|AAA81131.1| 785|Caenorhabditis elegans Temporarily
assigned gene nameprotein 151 protein.
Length = 785
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +1
Query: 94 EEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNSEEQVH 249
EE+ ED+D SD E + E E + +EA E +++ F+ +E ++
Sbjct: 384 EEDSDEDMDDSDNEEVEDDSEEEEPMDDLKSEAGETTASEMMFDDGIDEDIN 435
>Z92789-3|CAB07220.1| 123|Caenorhabditis elegans Hypothetical
protein H02I12.6 protein.
Length = 123
Score = 27.1 bits (57), Expect = 8.1
Identities = 19/75 (25%), Positives = 34/75 (45%)
Frame = +1
Query: 253 KKQKTEVIRSTKLPIARIKNIMKMDPDVNIVSSDAVFLVTKATEMFLETIVKETYAFTSS 432
KK++ S + I R+ + ++ PD VSS A+ ++ E I E
Sbjct: 25 KKRRHARKESYSVYIYRV--LKQVHPDTG-VSSKAMSIMNSFVNDVFERIASEASRLAHY 81
Query: 433 NKRKVISKKDLELVI 477
NKR IS ++++ +
Sbjct: 82 NKRSTISSREIQTAV 96
>Z82271-3|CAB05211.1| 123|Caenorhabditis elegans Hypothetical
protein F54E12.4 protein.
Length = 123
Score = 27.1 bits (57), Expect = 8.1
Identities = 19/75 (25%), Positives = 34/75 (45%)
Frame = +1
Query: 253 KKQKTEVIRSTKLPIARIKNIMKMDPDVNIVSSDAVFLVTKATEMFLETIVKETYAFTSS 432
KK++ S + I R+ + ++ PD VSS A+ ++ E I E
Sbjct: 25 KKRRHARKESYSVYIYRV--LKQVHPDTG-VSSKAMSIMNSFVNDVFERIASEASRLAHY 81
Query: 433 NKRKVISKKDLELVI 477
NKR IS ++++ +
Sbjct: 82 NKRSTISSREIQTAV 96
>Z73102-9|CAA97413.1| 123|Caenorhabditis elegans Hypothetical
protein B0035.8 protein.
Length = 123
Score = 27.1 bits (57), Expect = 8.1
Identities = 19/75 (25%), Positives = 34/75 (45%)
Frame = +1
Query: 253 KKQKTEVIRSTKLPIARIKNIMKMDPDVNIVSSDAVFLVTKATEMFLETIVKETYAFTSS 432
KK++ S + I R+ + ++ PD VSS A+ ++ E I E
Sbjct: 25 KKRRHARKESYSVYIYRV--LKQVHPDTG-VSSKAMSIMNSFVNDVFERIASEASRLAHY 81
Query: 433 NKRKVISKKDLELVI 477
NKR IS ++++ +
Sbjct: 82 NKRSTISSREIQTAV 96
>U58750-8|AAB00648.1| 123|Caenorhabditis elegans Histone protein 62
protein.
Length = 123
Score = 27.1 bits (57), Expect = 8.1
Identities = 19/75 (25%), Positives = 34/75 (45%)
Frame = +1
Query: 253 KKQKTEVIRSTKLPIARIKNIMKMDPDVNIVSSDAVFLVTKATEMFLETIVKETYAFTSS 432
KK++ S + I R+ + ++ PD VSS A+ ++ E I E
Sbjct: 25 KKRRHARKESYSVYIYRV--LKQVHPDTG-VSSKAMSIMNSFVNDVFERIASEASRLAHY 81
Query: 433 NKRKVISKKDLELVI 477
NKR IS ++++ +
Sbjct: 82 NKRSTISSREIQTAV 96
>AL034488-12|CAD31697.1| 450|Caenorhabditis elegans Hypothetical
protein Y54G11A.14 protein.
Length = 450
Score = 27.1 bits (57), Expect = 8.1
Identities = 18/65 (27%), Positives = 35/65 (53%)
Frame = +1
Query: 82 QNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNSEEQVHEKKQ 261
++ EEE +ED D + ++ + ++E + E EA++ + E N E+V E+K+
Sbjct: 34 EDEDEEEENEDEDEDEDDDNDDDEDDDEEEEDEDEEEDEAEDEAEDDEEN--EEVKEEKE 91
Query: 262 KTEVI 276
EV+
Sbjct: 92 DEEVV 96
>AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical
protein Y11D7A.14 protein.
Length = 1464
Score = 27.1 bits (57), Expect = 8.1
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +1
Query: 73 SSLQNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNSE 237
+ +Q +S+E + + I+ + E+ LE+E +FA T D KL ELN +
Sbjct: 986 NQIQKLSDENNEQRLTIAKL----ETALEDEKARFARQNNTIGDMQKLISELNEK 1036
>AF098993-7|ABN43095.1| 525|Caenorhabditis elegans Hypothetical
protein T10B11.7b protein.
Length = 525
Score = 27.1 bits (57), Expect = 8.1
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Frame = +1
Query: 58 RKYKPSSLQNMSEEECHEDVDISDITEHSESYLENE-HLKFALTEATEADNNKLEF-ELN 231
+ +KP+ +M+ E +D D +E+SES ++E K A+ AD+ +EF E+
Sbjct: 394 QSFKPAYTTDMTSEFLEDDGDTEFKSENSESDSDSEDEQKVENDVASSADD--IEFIEIV 451
Query: 232 SEEQVHEKKQKTEVIRSTKLPIARIKNIMKMDPD 333
E+ ++ +V S +N M M+ D
Sbjct: 452 EAERKMDQNLAQQVRSSFVTTAENTENNMLMEDD 485
>AF098993-6|AAC67469.2| 562|Caenorhabditis elegans Hypothetical
protein T10B11.7a protein.
Length = 562
Score = 27.1 bits (57), Expect = 8.1
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Frame = +1
Query: 58 RKYKPSSLQNMSEEECHEDVDISDITEHSESYLENE-HLKFALTEATEADNNKLEF-ELN 231
+ +KP+ +M+ E +D D +E+SES ++E K A+ AD+ +EF E+
Sbjct: 431 QSFKPAYTTDMTSEFLEDDGDTEFKSENSESDSDSEDEQKVENDVASSADD--IEFIEIV 488
Query: 232 SEEQVHEKKQKTEVIRSTKLPIARIKNIMKMDPD 333
E+ ++ +V S +N M M+ D
Sbjct: 489 EAERKMDQNLAQQVRSSFVTTAENTENNMLMEDD 522
>AF078789-3|AAK68487.1| 295|Caenorhabditis elegans Hypothetical
protein Y44E3B.1b protein.
Length = 295
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 187 EATEADNNKLEFELNSEEQVHEKKQKTEVIRSTKLPIAR 303
E E D K+ FE+ +EE+ + KT +T+ I R
Sbjct: 129 EYEEQDGYKMNFEVKTEEEKKPETMKTSKTMTTRRAIKR 167
>AF078789-2|AAK21516.1| 318|Caenorhabditis elegans Hypothetical
protein Y44E3B.1a protein.
Length = 318
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 187 EATEADNNKLEFELNSEEQVHEKKQKTEVIRSTKLPIAR 303
E E D K+ FE+ +EE+ + KT +T+ I R
Sbjct: 129 EYEEQDGYKMNFEVKTEEEKKPETMKTSKTMTTRRAIKR 167
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,603,200
Number of Sequences: 27780
Number of extensions: 174104
Number of successful extensions: 743
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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