Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS333B03f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom... 27 2.2
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces... 26 3.0
SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharom... 26 3.0
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar... 26 3.0
SPAC869.06c |||cation binding protein |Schizosaccharomyces pombe... 26 3.9
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po... 25 5.2
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po... 25 6.8
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 25 9.0
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo... 25 9.0
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo... 25 9.0
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 25 9.0
>SPAC3G9.14 |sak1||transcriptional repressor
Sak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 766
Score = 26.6 bits (56), Expect = 2.2
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = -3
Query: 354 SLKLASGTAAVSSHPLPALMNALFNSWTKYKNLSLSEKEPPRSAA-PGY 211
+L+LA AA +HPLP+ ++ N + + S+ PPRS + P Y
Sbjct: 261 NLQLAPSFAAPQAHPLPSHLSQ-SNVPPQLSHSSVPSPAPPRSVSQPTY 308
>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 564
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 86 WAEGGSKYSHMVAQKSTRMSFIRS-VVDFLKKYDFDGLDLD 205
W + G + + + S S++ + KYDFDGL +D
Sbjct: 189 WQDSGVLLADLDVESSDVSSYLSDHFKSLISKYDFDGLRID 229
>SPCC1223.08c |dfr1||dihydrofolate reductase
Dfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 461
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 47 KHPDVKFMVAVGGWAEGGSKYSHMVAQKSTRMS 145
+HP KF+V VGG+ ++ H K T S
Sbjct: 136 QHPPFKFVVFVGGFRAEKPEFDHFYNPKLTTPS 168
>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 26.2 bits (55), Expect = 3.0
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 125 QKSTRMSFIRSVVDFLKKYDFDGLDLD 205
+ R F V D +K+Y FDG+ LD
Sbjct: 190 KNEVRKFFQNWVSDLIKRYQFDGIRLD 216
>SPAC869.06c |||cation binding protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 25.8 bits (54), Expect = 3.9
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +3
Query: 12 RVVSVTSHPSAPNTPMSSSWSRLAAGLKAAP 104
+ V SHPSAPN P + AGL AAP
Sbjct: 165 KFVPTHSHPSAPNKPPFET----VAGLFAAP 191
>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 949
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -2
Query: 199 IQTVEVIFLQEVDNASD 149
+ TVE+ LQE++NASD
Sbjct: 223 LDTVELHLLQEIENASD 239
>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1010
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/33 (30%), Positives = 23/33 (69%)
Frame = -3
Query: 351 LKLASGTAAVSSHPLPALMNALFNSWTKYKNLS 253
L ++S + +++S P P++ ++ +S ++ KNLS
Sbjct: 566 LSISSSSKSINSSPSPSIQLSVSSSISRDKNLS 598
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -2
Query: 340 KRYGSSQLPSSTGSDE 293
++ GS QLPSST DE
Sbjct: 37 RKEGSRQLPSSTSKDE 52
>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 568
Score = 24.6 bits (51), Expect = 9.0
Identities = 15/57 (26%), Positives = 23/57 (40%)
Frame = +2
Query: 314 WELTAAVPLANFRLMEGYHVPELCQELDAIHVMSYDLRGNWAGFADVHSPLYKRPHD 484
W+ A P F L+ Y++ E +D +W F D +SP + HD
Sbjct: 479 WDSLAGSPGKVFDLLRDYYIAETKGAVDV---------SDWENFMDDNSPRQRNGHD 526
>SPBC19G7.10c |||topoisomerase associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 744
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/56 (25%), Positives = 29/56 (51%)
Frame = -2
Query: 352 PEISKRYGSSQLPSSTGSDERPL*LLDEIQELVFIGEGATPVSGTGILPVQIQTVE 185
P++S+ G+SQ PS + + L ++Q + I E P I+P ++ +++
Sbjct: 101 PQVSRLNGASQFPSREPA-STAINKLSDLQPMASIWENIVP-EKPAIIPPEVASLQ 154
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 24.6 bits (51), Expect = 9.0
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +3
Query: 18 VSVTSHPSAPNTPMSSSWSRLAAGLKAAPSTHTWWPRRALGCPSSEALSTS 170
++V +HP+ P+ P R+A+ LK +P P+ PSS S
Sbjct: 532 ITVNAHPNQPSRPRLP---RVASPLKTSPVKLAVTPQAPSPLPSSNPSQAS 579
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,306,162
Number of Sequences: 5004
Number of extensions: 47891
Number of successful extensions: 132
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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