Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS333B03f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0649 - 18402976-18403220,18403305-18404499 47 1e-05
11_04_0234 + 15187065-15188241,15188316-15188494 46 2e-05
10_08_0011 + 14088375-14089241 32 0.32
01_03_0028 - 11783122-11783381,11783668-11784163 32 0.32
10_08_0009 + 14075929-14076789 31 0.74
03_02_0687 + 10413338-10413430,10413538-10413934,10414040-104141... 29 1.7
06_01_0336 + 2427017-2427121,2427585-2427662,2427889-2427960,242... 29 3.0
10_08_0007 + 14044844-14045767 28 4.0
09_06_0038 - 20415363-20415883,20415917-20416596,20416858-204169... 28 5.2
04_04_1428 + 33522795-33523489,33525463-33525620,33525838-33526235 28 5.2
11_01_0051 + 391254-391343,391460-391862,392345-392352,393627-39... 27 6.9
10_08_0491 - 18283404-18283482,18283590-18283658,18283767-182838... 27 6.9
06_01_0375 + 2699179-2699264,2699697-2699786,2699913-2699991,270... 27 6.9
03_05_0421 + 24065725-24066052,24066811-24067040 27 6.9
11_06_0762 + 27043460-27044319,27052096-27052912,27052992-270536... 27 9.1
06_01_1124 + 9264206-9264234,9264784-9266185 27 9.1
05_02_0100 + 6594787-6594878,6595443-6595728,6595809-6595887,659... 27 9.1
03_06_0292 - 32886148-32886354,32886997-32887154,32887265-328873... 27 9.1
>04_03_0649 - 18402976-18403220,18403305-18404499
Length = 479
Score = 46.8 bits (106), Expect = 1e-05
Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 19/166 (11%)
Frame = +2
Query: 35 SLRSKHPDVKFMVAVG-GWAEGGSK----------YSHMVAQKSTRMSFIRSVVDFLKKY 181
++++K+ VK ++++G G GG+ ++ M A ++R +FI + V ++
Sbjct: 99 AVKAKNAAVKTVLSIGRGGGAGGAAAVAGSGSDPAFAAMAADPASRAAFIGAAVKVAREN 158
Query: 182 DFDGLDLDWEYPGAADRGGSFSDKDKFLYFVQELKRAFIRAGRGWELTAAVPLANFRL-- 355
FDGLD+ W +P +A + +F + V E + A RG+ LTA V +N
Sbjct: 159 GFDGLDVAWRFPASA------VEMAEFGFLVAEWRAA---VPRGFLLTATVYFSNHVFDA 209
Query: 356 -MEGYHVPE--LCQELDAIHVMSYDLRGNWAGFADV---HSPLYKR 475
G P + + LD ++VM++ LR A A+ +PLY R
Sbjct: 210 PFAGVDYPSETVARSLDWVNVMAFGLRPPGAANANATAFDAPLYDR 255
>11_04_0234 + 15187065-15188241,15188316-15188494
Length = 451
Score = 45.6 bits (103), Expect = 2e-05
Identities = 31/128 (24%), Positives = 62/128 (48%), Gaps = 5/128 (3%)
Frame = +2
Query: 107 YSHMVAQKSTRMSFIRSVVDFLKKYDFDGLDLDWEYPGAADRGGSFSDKDKFLYFVQELK 286
+S M ++K+ R +FI S ++ + FDGLDL W +P + D + + ++
Sbjct: 129 FSRMASEKNLRRAFINSSIELARANGFDGLDLAWRFPATQLDMENLGDL-LAEWRAEIME 187
Query: 287 RAFIRAGRGWELTAAVPLAN--FRLME---GYHVPELCQELDAIHVMSYDLRGNWAGFAD 451
+ R+ LTA V +N F + + Y + ++ LD ++++++ L N +
Sbjct: 188 DSTTRSTEPLLLTATVYFSNHLFGMADTNLNYPIDDMSSSLDWVNIITFSLHKN-SNVTT 246
Query: 452 VHSPLYKR 475
+PLY +
Sbjct: 247 ADAPLYDK 254
>10_08_0011 + 14088375-14089241
Length = 288
Score = 31.9 bits (69), Expect = 0.32
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +2
Query: 35 SLRSKHPDVKFMVAVGGWA--EGGSKYSHMVAQKSTRMSFIRSVVDFLKKYDFDGLDLDW 208
++++ HP+V MV +GG + + + + S + + SV + Y DG+D+D+
Sbjct: 73 AVKAAHPNVSVMVGLGGDSVQDTAKVFFSPTSVDSWVANAVASVSGIIDAYGLDGVDVDY 132
Query: 209 EYPGAADRGGSFSD 250
E+ D GG+ D
Sbjct: 133 EH--FNDDGGAGVD 144
>01_03_0028 - 11783122-11783381,11783668-11784163
Length = 251
Score = 31.9 bits (69), Expect = 0.32
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 167 FLKKYD-FDGLDLDWEYPGAADRGGSFSDKDKFLYFVQELKRAFIR 301
F+ K++ DG D DW++P AD F D D+ + V+ L + R
Sbjct: 187 FVGKHNKMDGSDYDWDWPHTADVYYRFFDPDRDVGLVEHLYKVITR 232
>10_08_0009 + 14075929-14076789
Length = 286
Score = 30.7 bits (66), Expect = 0.74
Identities = 15/62 (24%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Frame = +2
Query: 41 RSKHPDVKFMVAVGGWAEGGSKYSHMVAQKSTRMSFIRSVVD----FLKKYDFDGLDLDW 208
++ HP++ ++A+GG + + A S+ +++R+ D + Y DG+D+D+
Sbjct: 75 KAAHPNLSVILALGGDTVQNTGVNATFAPTSSVDAWVRNAADSVSGLIDAYGLDGVDVDY 134
Query: 209 EY 214
E+
Sbjct: 135 EH 136
>03_02_0687 +
10413338-10413430,10413538-10413934,10414040-10414168,
10414370-10414517,10414647-10415925
Length = 681
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -2
Query: 232 PVSGTGILPVQIQTVEVIFLQEVDNASDEGHPSALLGHHV*VLGAAF 92
PV GT + V+ V I Q+ + E HP + G+H VL F
Sbjct: 550 PVKGTKLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGF 596
>06_01_0336 +
2427017-2427121,2427585-2427662,2427889-2427960,
2428105-2428671,2428822-2428935,2431308-2432246
Length = 624
Score = 28.7 bits (61), Expect = 3.0
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = -3
Query: 366 YPSISLKLAS-GTAAVSSHPLPALMNALFNSWTKYKNLSLSEKEPPRSAAPGY 211
YP+I+L L S AA SSH +L N ++ + S P + PGY
Sbjct: 406 YPTITLDLTSPAAAATSSHAAFSLSNRFSHTRYPSTGFTFSGSGPSSAPWPGY 458
>10_08_0007 + 14044844-14045767
Length = 307
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/60 (21%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +2
Query: 35 SLRSKHPDVKFMVAVGGWAEGGSK-YSHMVAQKSTRMSFIRSVVDFLKKYDFDGLDLDWE 211
S++ +P+V+ V++GG + ++ + S + + S+ ++ + DG+D+D+E
Sbjct: 95 SIKQSNPNVRVAVSMGGATVNDRPVFFNITSVDSWVNNAVESLTGIIQDNNLDGIDIDYE 154
>09_06_0038 -
20415363-20415883,20415917-20416596,20416858-20416911,
20417440-20417489,20417665-20417800,20419030-20419128,
20419411-20419676
Length = 601
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +3
Query: 21 SVTSHPSAPNTPMSSSWSRLAAGLKAAPST 110
S +S P+A ++P SSSW L + L AA S+
Sbjct: 15 SSSSSPTAASSPPSSSWIHLRSLLVAAASS 44
>04_04_1428 + 33522795-33523489,33525463-33525620,33525838-33526235
Length = 416
Score = 27.9 bits (59), Expect = 5.2
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 50 HPDVKFMVAVGGWAEGGSKYSHMVAQKSTRMSF 148
+P ++ A GG GG+ YSH A + +F
Sbjct: 93 YPTSHYLAAAGGAGGGGNPYSHFTAAAAAGSTF 125
>11_01_0051 +
391254-391343,391460-391862,392345-392352,393627-393704,
395371-395763
Length = 323
Score = 27.5 bits (58), Expect = 6.9
Identities = 20/77 (25%), Positives = 32/77 (41%)
Frame = -2
Query: 232 PVSGTGILPVQIQTVEVIFLQEVDNASDEGHPSALLGHHV*VLGAAFSPAANRDHELDIG 53
PV+GT + ++ + + LQ + + E HP L G+ +L N D D G
Sbjct: 194 PVAGTKVYKLKYGSAVQVVLQGTNIFAGENHPIHLHGYDFYILAEGL---GNFDAGADTG 250
Query: 52 VFGAEGCEVTETTLIHV 2
F E + T + V
Sbjct: 251 KFNVEDPPMRNTVGVPV 267
>10_08_0491 -
18283404-18283482,18283590-18283658,18283767-18283883,
18283953-18284068,18284149-18284223,18284248-18284430,
18284530-18284591,18284668-18285606,18285723-18285846,
18285917-18286060,18286151-18286225,18286359-18286382,
18287025-18287095,18287305-18287407,18287555-18287781,
18287910-18288027,18288220-18288311,18288793-18288874
Length = 899
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 290 PSLTLGRNTRTCLYRRRSHPGQRH 219
P+LT+GRN T RR+ G RH
Sbjct: 631 PNLTVGRNPETSYINRRTMFGLRH 654
>06_01_0375 +
2699179-2699264,2699697-2699786,2699913-2699991,
2700816-2700893,2701290-2701338,2702183-2702232,
2702704-2702853,2703437-2703517,2703593-2703609,
2705804-2705893,2706033-2706111,2706234-2706311,
2707554-2707687,2707858-2707936,2708108-2708188,
2708263-2708400
Length = 452
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 77 VGGWAEGGSKYSHMVAQKSTRMSFIRSVV 163
+ GW G + H++ TR+SFIRS++
Sbjct: 225 MAGWDTEGP-FKHLLVMNPTRVSFIRSIL 252
>03_05_0421 + 24065725-24066052,24066811-24067040
Length = 185
Score = 27.5 bits (58), Expect = 6.9
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +3
Query: 33 HPSAPNTPMSSSWSRLAAGLKAAPSTHTWWPRRALGCPSSEALSTS*RNMTSTV 194
HPS P + +S R++AG H+ P+R +GCP + A S + R M +
Sbjct: 70 HPSYPCGYLGNSICRVSAG-------HST-PKRGVGCPPARARSGTGRGMRERI 115
>11_06_0762 +
27043460-27044319,27052096-27052912,27052992-27053649,
27053698-27053934,27054091-27054161,27054346-27054441
Length = 912
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -2
Query: 373 YMI--SLHQPEISKRYGSSQLPSSTGSDERPL*LLDE 269
YMI SLH+P +S Y +LP+ D+ L +D+
Sbjct: 144 YMIDDSLHKPRVSAIYDPPRLPADLSVDQHSLVGIDQ 180
>06_01_1124 + 9264206-9264234,9264784-9266185
Length = 476
Score = 27.1 bits (57), Expect = 9.1
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +2
Query: 71 VAVGGWAEGGSKYSHMVAQKSTR-MSFIRSVVDFLKKYDFDGLDL-DWEYPGAADRGGS 241
+++ G G + H VA K+T + + +++ F F L + +PGAAD GG+
Sbjct: 41 LSIRGLLAGARRTRHAVAAKATTSVPALVALLFFFAAATFSVFSLGSFRWPGAADDGGA 99
>05_02_0100 + 6594787-6594878,6595443-6595728,6595809-6595887,
6595964-6596013,6597281-6597478,6597555-6597612,
6598388-6598496,6599253-6599321,6599684-6599812,
6599970-6600082,6600386-6600479,6602827-6602917,
6604145-6604233,6604715-6604856,6605849-6606196,
6606314-6607408
Length = 1013
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -1
Query: 425 ADHTTSRG*RPVPDTALVHDIP 360
+D+T S RP+PD+ + DIP
Sbjct: 959 SDNTASDAKRPLPDSTYIEDIP 980
>03_06_0292 -
32886148-32886354,32886997-32887154,32887265-32887378,
32887660-32887924
Length = 247
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = +2
Query: 47 KHPDVKFMVAVGGWAEGGSKYSHMVAQKSTRMSFIRSV 160
KH G A GG Y +M+ R +FIR V
Sbjct: 3 KHGKCDVEACYPGGAPGGGMYPYMIENAQLRWAFIRKV 40
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,690,212
Number of Sequences: 37544
Number of extensions: 387260
Number of successful extensions: 1163
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1161
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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