Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333B03f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    24   0.82 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   1.9  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   4.4  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   5.8  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 111 HTWWPRRALGC 143
           HTWWP   L C
Sbjct: 163 HTWWPYDILNC 173


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 96  PSAQPPTATMNLTSGCLERRDVKL 25
           P  QPP+A  NLT   +++  V L
Sbjct: 313 PCTQPPSAPQNLTVNFVDQSTVFL 336


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -3

Query: 285 FNSWTKYKNLSLSEKEPPRSA 223
           F+   KY+ +++ EK+P RS+
Sbjct: 535 FSKPFKYQGITILEKKPSRSS 555


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +3

Query: 6   WIRVVSVTSHPSAPNTPMSSSWSR 77
           WI V  +  H  +P+T   S W R
Sbjct: 328 WITVCVLNVHFRSPSTHNMSPWVR 351


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,296
Number of Sequences: 438
Number of extensions: 3491
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)