Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333B01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...   243   1e-65
SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces ...    30   0.18 
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...    27   1.3  
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    26   3.9  
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ...    25   6.8  
SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces p...    25   9.0  
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    25   9.0  

>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score =  243 bits (595), Expect = 1e-65
 Identities = 107/161 (66%), Positives = 127/161 (78%)
 Frame = +2

Query: 2   RYDGRFKDIFEEVFQSDYKTKFDEAKIWYEHRLIDDMVAQAIKGSGGFVWACKNYDGDVQ 181
           +YDGRFKD F+EV++SDYK KF+E  +WY+HRLIDDMVAQAIK +GGFVWACKNYDGDV 
Sbjct: 228 KYDGRFKDTFQEVYESDYKQKFEELGLWYQHRLIDDMVAQAIKSNGGFVWACKNYDGDVM 287

Query: 182 SDIVAQGYGSLGMMTSVLMCPDGRTVESEAAHGTVTRHYRMHQQGKPTSTNPVASIYAWT 361
           SD+VAQ YGSLG+MTSVL+ P+GRT ESEAAHGTV RHY  + +GK TSTN +ASI+AWT
Sbjct: 288 SDVVAQAYGSLGLMTSVLIHPNGRTFESEAAHGTVQRHYMQYLKGKKTSTNSIASIFAWT 347

Query: 362 RGLAHRAKLDGTPXXXXXXXXXXXXCVECIDSGKMTKDLVI 484
           RGLAHR +LDG              CV C++ G MTKDL +
Sbjct: 348 RGLAHRGRLDGNERLVKFANALEHACVRCVEKGIMTKDLYL 388


>SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 362

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +2

Query: 74  AKIWYEHRLIDDMVAQAIKGSGGF-VWACKNYDGDVQSDIVAQGYGSLGMMTSVLMCPDG 250
           A I  + +++D MV +  +    F V    N  GD+ SD  A   GSLG++ S  +    
Sbjct: 222 ASINVDEQIVDSMVYRLFREPECFDVVVAPNLYGDILSDGAASLIGSLGLVPSANV--GD 279

Query: 251 RTVESEAAHGT 283
             V SE  HG+
Sbjct: 280 NFVMSEPVHGS 290


>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +2

Query: 161 NYDGDVQSDIVAQGYGSLGMMTSVLMCPDGRTVESEAAHGTV 286
           N+ G   + + +QG+ +   + S LMCP    +  E  H ++
Sbjct: 244 NFVGKPAALVFSQGFSTNATVFSTLMCPGSLIISDELNHTSI 285


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
 Frame = +2

Query: 20   KDIFEEVFQSDYKTKFDEAKIWYEH-RLIDDMVAQAIKGSGGFVWACKNYDGDVQSDIVA 196
            K I+E +        F  AK W  H    DD+ +       G V+  KNYDGDV++D+  
Sbjct: 774  KCIYEGIQIDAAFASFFVAK-WLGHPSYFDDLTSLDPNLYEGLVFL-KNYDGDVENDMAL 831

Query: 197  Q---GYGSLGMMTSVLMCPDGRTV 259
                 +   G+   + + P+G  +
Sbjct: 832  NFTVVHEEFGVRNVIDLIPNGSNI 855


>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 314

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +2

Query: 134 SGGFVWACKNYDGDVQSDIVAQGYGSLGMMTSVLMCPDGRTVESEAAHGTV 286
           S G+  A K +D +  S +    YG  G +++V + PDG    S    GT+
Sbjct: 167 SAGWDKAVKVWDLETFS-LRTSHYGHTGYVSAVTISPDGSLCASGGRDGTL 216


>SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 506

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 479 PNLLSFYRYRCTRRTPLR 426
           P +L   RY C R+TPL+
Sbjct: 159 PYVLEIPRYACQRKTPLK 176


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -1

Query: 287 SPSRAPLRIPRYGHRDTSILMSSFPMTRNPEQQY 186
           SPS  P  +P Y H ++ +    +P    P + Y
Sbjct: 422 SPSSIPSGLPTYAHVNSPLGTEQYPSEAYPPKGY 455


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,180,807
Number of Sequences: 5004
Number of extensions: 42922
Number of successful extensions: 105
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)