Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS333B01f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0194 + 28327328-28327376,28327699-28327742,28327852-283279... 260 5e-70
01_06_0109 - 26526691-26526775,26526894-26527019,26527228-265273... 258 1e-69
04_04_0457 + 25359486-25359571,25360690-25360782,25361561-253616... 251 3e-67
01_01_1031 + 8169505-8169553,8169831-8169905,8170395-8170438,817... 237 5e-63
09_02_0441 + 9433204-9433431,9433515-9434273 29 1.7
01_06_1525 + 37988037-37988237,37988315-37988410,37988508-379886... 29 2.3
04_04_0182 + 23380012-23380099,23380854-23381041 28 4.0
09_02_0442 - 9438617-9439381,9439463-9439693 27 6.9
07_01_0894 - 7501918-7502535,7503568-7503604,7503781-7503951,750... 27 6.9
06_01_0928 - 7159857-7159922,7159923-7160024,7160126-7160206,716... 27 9.1
>05_07_0194 +
28327328-28327376,28327699-28327742,28327852-28327961,
28328250-28328287,28328371-28328448,28328527-28328580,
28328663-28328764,28329152-28329237,28329327-28329430,
28329542-28329610,28329689-28329804,28329949-28329983,
28330152-28330294,28330473-28330598,28330700-28330784
Length = 412
Score = 260 bits (637), Expect = 5e-70
Identities = 111/168 (66%), Positives = 138/168 (82%)
Frame = +2
Query: 2 RYDGRFKDIFEEVFQSDYKTKFDEAKIWYEHRLIDDMVAQAIKGSGGFVWACKNYDGDVQ 181
+YDGRFKDIF+EV+++ +K+KF+ A IWYEHRLIDDMVA A+K GG+VWACKNYDGDVQ
Sbjct: 218 KYDGRFKDIFQEVYEAQWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQ 277
Query: 182 SDIVAQGYGSLGMMTSVLMCPDGRTVESEAAHGTVTRHYRMHQQGKPTSTNPVASIYAWT 361
SD +AQG+GSLG+MTSVL+CPDG+T+E+EAAHGTVTRHYR+HQ+G TSTN +ASI+AWT
Sbjct: 278 SDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWT 337
Query: 362 RGLAHRAKLDGTPXXXXXXXXXXXXCVECIDSGKMTKDLVICIHGLAN 505
RGLAHRAKLD C+ ++SGKMTKDL + +HG +N
Sbjct: 338 RGLAHRAKLDDNARLLDFTQKLEAACIGAVESGKMTKDLALLVHGSSN 385
>01_06_0109 -
26526691-26526775,26526894-26527019,26527228-26527370,
26527521-26527555,26527676-26527791,26527868-26527936,
26528070-26528173,26528253-26528338,26528429-26528530,
26528609-26528662,26528763-26528840,26528936-26528973,
26529235-26529344,26529463-26529506,26530232-26530280
Length = 412
Score = 258 bits (633), Expect = 1e-69
Identities = 112/168 (66%), Positives = 138/168 (82%)
Frame = +2
Query: 2 RYDGRFKDIFEEVFQSDYKTKFDEAKIWYEHRLIDDMVAQAIKGSGGFVWACKNYDGDVQ 181
+YDGRFKDIF+EV+++ +K+KF+ A IWYEHRLIDDMVA A+K GG+VWACKNYDGDVQ
Sbjct: 218 KYDGRFKDIFQEVYEAGWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQ 277
Query: 182 SDIVAQGYGSLGMMTSVLMCPDGRTVESEAAHGTVTRHYRMHQQGKPTSTNPVASIYAWT 361
SD +AQG+GSLG+MTSVL+CPDG+T+E+EAAHGTVTRH+R+HQ+G TSTN +ASI+AWT
Sbjct: 278 SDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHFRVHQKGGETSTNSIASIFAWT 337
Query: 362 RGLAHRAKLDGTPXXXXXXXXXXXXCVECIDSGKMTKDLVICIHGLAN 505
RGLAHRAKLD CV ++SGKMTKDL + IHG +N
Sbjct: 338 RGLAHRAKLDDNARLLDFALKLEAACVGTVESGKMTKDLALLIHGSSN 385
>04_04_0457 +
25359486-25359571,25360690-25360782,25361561-25361622,
25361758-25361816,25363624-25363733,25364795-25364829,
25365469-25365546,25365952-25366005,25366277-25366362,
25366468-25366571,25366986-25367054,25367135-25367250,
25367387-25367421,25367512-25367654,25367808-25367930,
25368463-25368556
Length = 448
Score = 251 bits (614), Expect = 3e-67
Identities = 109/171 (63%), Positives = 136/171 (79%)
Frame = +2
Query: 2 RYDGRFKDIFEEVFQSDYKTKFDEAKIWYEHRLIDDMVAQAIKGSGGFVWACKNYDGDVQ 181
+YDGRFKDIF+EV++ +K KF+E IWYEHRLIDDMVA A+K GG+VWACKNYDGDVQ
Sbjct: 252 KYDGRFKDIFQEVYEEKWKEKFEENSIWYEHRLIDDMVAYAVKSEGGYVWACKNYDGDVQ 311
Query: 182 SDIVAQGYGSLGMMTSVLMCPDGRTVESEAAHGTVTRHYRMHQQGKPTSTNPVASIYAWT 361
SD +AQG+GSLG+M+SVL+ DG+T+E+EAAHGTVTRH+R+HQ+G+ TSTN +ASI+AWT
Sbjct: 312 SDFLAQGFGSLGLMSSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWT 371
Query: 362 RGLAHRAKLDGTPXXXXXXXXXXXXCVECIDSGKMTKDLVICIHGLANTKE 514
RGL HRAKLD C+E ++SGKMTKDL + IHG T+E
Sbjct: 372 RGLEHRAKLDKNDRLLDFTKKLESACIETVESGKMTKDLALLIHGPKVTRE 422
>01_01_1031 +
8169505-8169553,8169831-8169905,8170395-8170438,
8170633-8170742,8170960-8170997,8171055-8171186,
8171298-8171351,8171424-8171525,8172679-8172764,
8172870-8172973,8173056-8173124,8173156-8173209,
8173210-8173325,8173420-8173454,8173637-8173779,
8174105-8174227,8174305-8174398
Length = 475
Score = 237 bits (579), Expect = 5e-63
Identities = 109/183 (59%), Positives = 134/183 (73%), Gaps = 18/183 (9%)
Frame = +2
Query: 2 RYDGRFKDIFEEVFQSDYKTKFDEAKIW------------------YEHRLIDDMVAQAI 127
+YDGRFKDIF+E +++ ++ KFD+A IW YEHRLIDDMVA A+
Sbjct: 261 KYDGRFKDIFQENYETKWRAKFDDAGIWNMEPYFPPLCPNHFCCGRYEHRLIDDMVAYAL 320
Query: 128 KGSGGFVWACKNYDGDVQSDIVAQGYGSLGMMTSVLMCPDGRTVESEAAHGTVTRHYRMH 307
K GG+VWACKNYDGDVQSD++AQG+GSLG+MTSVL+CPDGRT+E+EAAHGTVTRHYR+H
Sbjct: 321 KSEGGYVWACKNYDGDVQSDLIAQGFGSLGLMTSVLVCPDGRTIEAEAAHGTVTRHYRVH 380
Query: 308 QQGKPTSTNPVASIYAWTRGLAHRAKLDGTPXXXXXXXXXXXXCVECIDSGKMTKDLVIC 487
Q+G TSTN +ASI+AWT GL HRAKLD CV ++SGKMTKDL +
Sbjct: 381 QKGGETSTNSIASIFAWTTGLGHRAKLDDNKRLLDFVQKLEAACVGTVESGKMTKDLALL 440
Query: 488 IHG 496
+HG
Sbjct: 441 VHG 443
>09_02_0441 + 9433204-9433431,9433515-9434273
Length = 328
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 160 ELRRRCAVRYCCSGLRVIGNDDISIDVSRWPYRGIRSGARD 282
EL RRC CS ++++ D + PY +R+G RD
Sbjct: 111 ELERRCPGVVSCSDIQILATRDAVVLAGGQPY-AVRTGRRD 150
>01_06_1525 +
37988037-37988237,37988315-37988410,37988508-37988620,
37988739-37988805,37988891-37988983,37989095-37989238,
37989681-37989769,37989912-37990017,37990224-37990311,
37990395-37990513,37990786-37990950,37991222-37991406,
37991568-37991668,37991960-37992069,37992287-37992394,
37992596-37992706,37992791-37993002,37993087-37993423,
37993593-37993619,37993767-37993877
Length = 860
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +2
Query: 233 LMCPDGRTVESE--AAHGTVTRHYRMHQQGKPTSTNPVASIYAWTRGLAHR 379
L CP G+++ S + G + R +QQG N ++ + T G AHR
Sbjct: 773 LSCPKGKSISSVKFVSFGNPSGTCRSYQQGSCHHPNSISVVEKGTLGWAHR 823
>04_04_0182 + 23380012-23380099,23380854-23381041
Length = 91
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 304 APARQADID*PGRFYLRLDKRSCTPGQIRRDSRIGAL 414
A +R A D G+FY L K C G +RR ++ +
Sbjct: 19 AISRTATSDGRGKFYSALSKTPCLYGSVRRSTKASTI 55
>09_02_0442 - 9438617-9439381,9439463-9439693
Length = 331
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 160 ELRRRCAVRYCCSGLRVIGNDDISIDVSRWPYRGIRSGARD 282
EL RRC CS ++++ D PY +R+G RD
Sbjct: 112 ELERRCPGVVSCSDIQILATRDAVALAGGRPY-AVRTGRRD 151
>07_01_0894 -
7501918-7502535,7503568-7503604,7503781-7503951,
7504396-7504631,7504796-7504867,7504963-7505097,
7505544-7505549
Length = 424
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 200 GYGSLGMMTSVLMCPDGRTVESEAAHGTV 286
G S+G T +LM P G +++E+ G V
Sbjct: 363 GVASVGAQTGILMGPSGVGIDAESTKGAV 391
>06_01_0928 -
7159857-7159922,7159923-7160024,7160126-7160206,
7160289-7160384,7160462-7160566,7160648-7160722,
7161372-7161431,7161960-7162090,7162175-7162250,
7163390-7163459,7163603-7163664,7163788-7163871,
7163973-7164047,7164448-7164585,7164733-7164791,
7164910-7165123,7167996-7168091,7168701-7169639
Length = 842
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 163 LRRRCAVRYCCSGLRVIGNDDISIDVSRWPYRGIRSGARDGDASLPYAP 309
L C C+ L + D+ + ++ PY +R G +DG +S P AP
Sbjct: 108 LEVECPGVVSCADLLAVAARDL-VTMTGGPYYPLRLGRKDGLSSSPSAP 155
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,127,756
Number of Sequences: 37544
Number of extensions: 328707
Number of successful extensions: 835
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -