Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333A12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha...   186   2e-48
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    27   2.2  
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe...    26   3.0  
SPCC777.15 |||tRNA dihydrouridine synthase Dus4 |Schizosaccharom...    26   3.9  
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   5.2  
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    25   5.2  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    25   9.0  
SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub...    25   9.0  

>SPAC1142.06 |get3||GET complex ATPase subunit Get3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score =  186 bits (452), Expect = 2e-48
 Identities = 90/170 (52%), Positives = 116/170 (68%)
 Frame = +1

Query: 1   KTTCSCSLAVQLSKVRESVLIISTDPAHNISDAFDQKFSKVPTKVKGFDNLFAMEIDPNV 180
           KTT SCSLA+Q+SKVR SVL+ISTDPAHN+SDAF  KF K   KV GFDNL AMEIDPN+
Sbjct: 32  KTTTSCSLAIQMSKVRSSVLLISTDPAHNLSDAFGTKFGKDARKVPGFDNLSAMEIDPNL 91

Query: 181 GLTELPEEYFEGESEAMRLDKGVMQEIVGAFPGIDEAMSYAEVMKLVKGMNFSAVXXDTA 360
            + E+ E+    +        G+MQ++    PGIDEA+++AE++K +K M F  V  DTA
Sbjct: 92  SIQEMTEQ--ADQQNPNNPLSGMMQDLAFTIPGIDEALAFAEILKQIKSMEFDCVIFDTA 149

Query: 361 PTGHTLRLLSFPQVVERGLGKLMRXKSKVAPFINQLRHXLGLADXXSDMF 510
           PTGHTLR L+FP V+E+ LGKL    S+  P INQ+   +G+     D+F
Sbjct: 150 PTGHTLRFLNFPTVLEKALGKLGGLSSRFGPMINQMGSIMGVNANEQDLF 199


>SPBC32H8.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = +2

Query: 83  TISLMHSTRNFLKYQQRLKGLTTYSLWRLIRML 181
           T+ L ++  +F++YQ  +K   T  +W+LI++L
Sbjct: 2   TVILQYAD-HFVEYQNDMKRYDTLHVWKLIKLL 33


>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 21/69 (30%), Positives = 30/69 (43%)
 Frame = +2

Query: 29  FSCRKFANLC*SYQLILPTISLMHSTRNFLKYQQRLKGLTTYSLWRLIRMLD*QSCLKNI 208
           F C KF NL     LI  T S+  +   FL Y +       +    L ++L  QSC+  +
Sbjct: 168 FGCIKFGNLNLDKALICSTCSISAALLLFLLYVRLPFWTLKHMFSGLFQVLGVQSCVVIV 227

Query: 209 LKENLRL*D 235
            K  + L D
Sbjct: 228 TKGLMYLFD 236


>SPCC777.15 |||tRNA dihydrouridine synthase Dus4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 326

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/41 (31%), Positives = 16/41 (39%)
 Frame = -1

Query: 179 TFGSISIANRLSNPLTFVGTLENFWSNASEILWAGSVDMIN 57
           T G +S    L NP  F G  E  W      LW  +   +N
Sbjct: 226 TQGIMSARGLLENPALFAGYEETPWGCVERFLWYSTSYSLN 266


>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 536

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 339 TKVHAFY*FHHLSIAHSLINT 277
           T+VHAFY  + L +  S INT
Sbjct: 265 TRVHAFYSLNDLKLETSTINT 285


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -3

Query: 315 FHHLSIAHSLINTRKSSNNLLHDTLVQS 232
           F +L I H L NT +  + ++HD + ++
Sbjct: 95  FENLEILHQLSNTPRDKDAVIHDKIEEN 122


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/61 (21%), Positives = 26/61 (42%)
 Frame = +1

Query: 220 SEAMRLDKGVMQEIVGAFPGIDEAMSYAEVMKLVKGMNFSAVXXDTAPTGHTLRLLSFPQ 399
           ++A+     +   ++ +   +D    Y ++  L+    F     D +  GH+  L SFP 
Sbjct: 641 TDALYSGSSICYSLIFSHSLLDLTFQYVDIASLLS--QFLLCVYDPSNVGHSFALASFPY 698

Query: 400 V 402
           V
Sbjct: 699 V 699


>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 804

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +1

Query: 103 DQKFS-KVPTKVKGFDNLFAMEIDPNVGLTELPEEYFEGESEAMRLDKG 246
           DQ ++ KV T +KG +NL  +         EL +E      EA  LD G
Sbjct: 690 DQGYAFKVITNLKGMENLPNLAYASKAERLELLQEVLLQNEEAADLDDG 738


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,814,073
Number of Sequences: 5004
Number of extensions: 31604
Number of successful extensions: 90
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)