Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS333A11f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c... 29 0.42
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 27 1.3
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 26 3.0
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 26 3.9
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 25 5.2
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom... 25 6.8
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 25 6.8
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 9.0
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 25 9.0
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ... 25 9.0
>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 767
Score = 29.1 bits (62), Expect = 0.42
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 54 YLLLSMFLFVNVNTHYLYQTKWFEVPLDH 140
YLL++ + F + N H+ Y TK F + H
Sbjct: 288 YLLMTFWQFSSDNNHFYYNTKLFAAKVHH 316
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 27.5 bits (58), Expect = 1.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 327 EHRYYGESKPFGNKSLEKEYIGYL 398
E +Y GES P G L ++Y+ YL
Sbjct: 92 ERQYDGESSPKGYSDLIRDYVDYL 115
>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 367
Score = 26.2 bits (55), Expect = 3.0
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -3
Query: 111 FDTNNEYSHSRIETLRATNNAT 46
F+T N+YS SR +T +++N T
Sbjct: 257 FNTKNDYSSSRSKTTASSSNGT 278
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 25.8 bits (54), Expect = 3.9
Identities = 21/82 (25%), Positives = 33/82 (40%)
Frame = +3
Query: 216 GPIFFYTGNEGQIEAFANYTGFMWEIAAEYQAKIVFAEHRYYGESKPFGNKSLEKEYIGY 395
G +F+ + + +AF ++ F A VF + G K + K Y+ Y
Sbjct: 478 GEVFYNPTSSSKNDAFVAHSSFFANEGDIITALNVFES--FVGNKKDL--QWCRKNYLNY 533
Query: 396 LTSAQALADYADLINYLQKDEI 461
T QAL L+ +L K I
Sbjct: 534 QTLRQALDIRTHLVRFLNKFSI 555
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 25.4 bits (53), Expect = 5.2
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -3
Query: 138 DREALQTI*FDTNNEYSHSRIETLRATNNAT 46
DREA + D NN+ S S E L + NN T
Sbjct: 682 DREARPQLLLDDNNDSSSSSSEHLISFNNHT 712
>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 703
Score = 25.0 bits (52), Expect = 6.8
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +3
Query: 237 GNEGQIEAFANYTGFMWEIAAEYQAKIVFAE-HRYYGESKPFGNKSLEKEYIGYLTSAQA 413
G Q +AFA+ ++ E +V + H Y S P KS+ + + SA A
Sbjct: 91 GASSQNDAFAHNPST--SVSVELVRPVVGTKKHAVYATSAP---KSMSLQDSLSVPSATA 145
Query: 414 LADYADLINYLQK 452
LAD + +NY +K
Sbjct: 146 LADVSSSLNYSRK 158
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = -1
Query: 392 PNVLFFQGLVTKRLGLSIISVLCENNLGLIFSRYLPHEAGVIGKCFYLTLI 240
PNV+ + G+ R ++I LC+ + F RY E ++ + + L L+
Sbjct: 1179 PNVVSYYGIEVHREKVNIFMELCQGSSLFEFLRYGRIEDELVIQVYVLQLL 1229
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 24.6 bits (51), Expect = 9.0
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = +3
Query: 333 RYYGESKPFGNK-SLEKEYIGYLTS---AQALADYADLINYLQKDEIXPRYPVIAFGGS 497
+YYGE+K +G LE E I L + +++ A+ + L D P++ GG+
Sbjct: 61 KYYGETKTYGEVFVLENERISQLHRLFVSWTVSERAEHLKNLLFDAGLSNLPLVELGGN 119
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 24.6 bits (51), Expect = 9.0
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +1
Query: 265 PITPASCGR*RLNIKPRLFSQSTDIMESPSLLVTSPWKKSTLGTSRQPRH 414
P + + ++NI+ S+ T IM SP+ + ST G S Q H
Sbjct: 299 PFPSENANKTQINIENATCSKMTWIMGSPTKEKSQWGSVSTTGVSNQQNH 348
>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1237
Score = 24.6 bits (51), Expect = 9.0
Identities = 18/82 (21%), Positives = 34/82 (41%)
Frame = +3
Query: 177 YLENEDYWNKNEYGPIFFYTGNEGQIEAFANYTGFMWEIAAEYQAKIVFAEHRYYGESKP 356
YL E++++ N +G + EG+ E Y G + Q +++ + +P
Sbjct: 899 YLPREEWFDLNPHGELLLRIEMEGEREHIGFYVGRTYHDLERAQREMI---KFIVNKMEP 955
Query: 357 FGNKSLEKEYIGYLTSAQALAD 422
N++L + L SA D
Sbjct: 956 VINQNLSTATLKKLLSANTWMD 977
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,306,191
Number of Sequences: 5004
Number of extensions: 49449
Number of successful extensions: 116
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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