Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333A11f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    30   0.013
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.4  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.4  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.4  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.4  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.4  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.4  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    22   4.4  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   4.4  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   4.4  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    22   4.4  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   5.8  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   7.7  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 30.3 bits (65), Expect = 0.013
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = -1

Query: 410 LG*REVPNVLFFQGLVTKRLGLSIISVLCEN 318
           +G  E PNV+F QG+VTK   + II+   EN
Sbjct: 688 MGQFEHPNVIFLQGVVTKSNPVMIITEFMEN 718


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = +3

Query: 168 KIKYLENEDYWNKNEYGPI 224
           K+++++    WN++EYG +
Sbjct: 40  KLEWVDYNLQWNESEYGGV 58


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = +3

Query: 168 KIKYLENEDYWNKNEYGPI 224
           K+++++    WN++EYG +
Sbjct: 40  KLEWVDYNLQWNESEYGGV 58


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = +3

Query: 168 KIKYLENEDYWNKNEYGPI 224
           K+++++    WN++EYG +
Sbjct: 40  KLEWVDYNLQWNESEYGGV 58


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = +3

Query: 168 KIKYLENEDYWNKNEYGPI 224
           K+++++    WN++EYG +
Sbjct: 40  KLEWVDYNLQWNESEYGGV 58


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = +3

Query: 168 KIKYLENEDYWNKNEYGPI 224
           K+++++    WN++EYG +
Sbjct: 40  KLEWVDYNLQWNESEYGGV 58


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = +3

Query: 168 KIKYLENEDYWNKNEYGPI 224
           K+++++    WN++EYG +
Sbjct: 40  KLEWVDYNLQWNESEYGGV 58


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/41 (21%), Positives = 18/41 (43%)
 Frame = +3

Query: 222 IFFYTGNEGQIEAFANYTGFMWEIAAEYQAKIVFAEHRYYG 344
           I+ ++G+E  I +  +     +    EY + I+   H   G
Sbjct: 251 IYLFSGHESNIASVLHALQLYYPHVPEYSSSIIMELHNIEG 291


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = +3

Query: 168 KIKYLENEDYWNKNEYGPI 224
           K+++++    WN++EYG +
Sbjct: 108 KLEWVDYNLQWNESEYGGV 126


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = +3

Query: 168 KIKYLENEDYWNKNEYGPI 224
           K+++++    WN++EYG +
Sbjct: 108 KLEWVDYNLQWNESEYGGV 126


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/41 (21%), Positives = 18/41 (43%)
 Frame = +3

Query: 222 IFFYTGNEGQIEAFANYTGFMWEIAAEYQAKIVFAEHRYYG 344
           I+ ++G+E  I +  +     +    EY + I+   H   G
Sbjct: 266 IYLFSGHESNIASVLHALQLYYPHVPEYSSSIIMELHNIEG 306


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = +3

Query: 177 YLENEDYWNKNEYGPIFFYTGNEGQIEAFANYTGFMWEI 293
           YL++E+    +  G  +  +G    +E F     F W+I
Sbjct: 189 YLKSENNTELSRVGTKYHRSGGLMNVERFPYQPPFAWKI 227


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 68  NVSIRECEYSLFVSN*MV*SASRSFRLREE 157
           N +I+ C Y+L + +       R +RLR E
Sbjct: 153 NTTIQACPYTLNIFDLTSDKLLRQYRLRAE 182


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,613
Number of Sequences: 438
Number of extensions: 3813
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)