Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333A10f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   3.3  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   3.3  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   3.3  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   7.7  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   7.7  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   7.7  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 27  SSF*IFWKMMYVIV*MTNLIYLTVVNTY 110
           SSF  +W +  +++ + NLI L V  ++
Sbjct: 85  SSFRFYWDLCMLLLLVANLIILPVAISF 112


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 27  SSF*IFWKMMYVIV*MTNLIYLTVVNTY 110
           SSF  +W +  +++ + NLI L V  ++
Sbjct: 85  SSFRFYWDLCMLLLLVANLIILPVAISF 112


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 27  SSF*IFWKMMYVIV*MTNLIYLTVVNTY 110
           SSF  +W +  +++ + NLI L V  ++
Sbjct: 85  SSFRFYWDLCMLLLLVANLIILPVAISF 112


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 330 SYLDIVPLTLQKDHFH 283
           S ++I+P T Q+ H H
Sbjct: 555 SKMEILPKTTQRQHHH 570


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 282 DGNDLSEVLKERYLNKKR*YRT*NNIYLNRNKL 380
           D ND+ E  +  +L ++R     NNI+ N +++
Sbjct: 390 DFNDIFEKDQASFLERERFLGIINNIFKNMSQI 422


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 282 DGNDLSEVLKERYLNKKR*YRT*NNIYLNRNKL 380
           D ND+ E  +  +L ++R     NNI+ N +++
Sbjct: 390 DFNDIFEKDQASFLERERFLGIINNIFKNMSQI 422


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,028
Number of Sequences: 438
Number of extensions: 2025
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)