Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333A04f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.08 |med7||mediator complex subunit Med7|Schizosaccharom...    27   1.3  
SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomy...    26   3.0  
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb...    25   5.2  
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    25   6.8  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.0  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    25   9.0  
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po...    25   9.0  
SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces po...    25   9.0  

>SPBC14F5.08 |med7||mediator complex subunit
           Med7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +2

Query: 194 KHDQLKQFELLRTQLRLKRELLQKYRNM 277
           KH++  Q ELLRT  R   E L+KY+++
Sbjct: 292 KHEE-SQVELLRTHNRQMTETLEKYKSL 318


>SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 89  STRCRENLSPRCNKH 45
           ++RC E++ P CNKH
Sbjct: 424 ASRCLESIEPLCNKH 438


>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 424

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 415 FYRGKEKLSDVDPHKVNKFIEFLKR 489
           F+R K KLS V+P  +   + F K+
Sbjct: 203 FFREKVKLSTVEPSAIKNLVLFAKK 227


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
            Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 292  IIQVKMPLRALLKYLANNERIVQKIAES-YPVRRAAQLAV 408
            I  V+ P    L  + + ER+V K+A S YP  +A++  V
Sbjct: 1268 IAGVRSPCGRFLAMMPHPERVVLKVANSYYPHSKASEWGV 1307


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = +2

Query: 101  SHECSHRVLELQKRLEIAKAQIRRLPGIEFNKHDQLKQFELLRTQLRLKRELLQK 265
            +HE S+  L  QK + I    +  + GI+  +H ++  F L    L++++EL  K
Sbjct: 2313 NHEFSNEQLLQQKFIRIHWEVLEAVAGIQVIQHFEINLFPL---SLQIEQELATK 2364


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1208

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 1/111 (0%)
 Frame = +2

Query: 50   YYSVERDFHDNASKIRESHECSHRVLELQKRLEIAKAQIRRLPGIEFNKHDQLKQFELLR 229
            Y S + ++ +N   +++ +E   R+ E+QK LE+      +   +  +      Q  +L+
Sbjct: 982  YRSNQFNYQNNL--VQDKNELEERLKEIQKELEVYNNHFMKQAELMTSNVTDESQL-MLK 1038

Query: 230  TQLRLKRELLQKYRNMCSFETSF-K*RCLYVRYLNT*PIMNALYRRLQSPT 379
            T   L+  L  K  N+    T   + R  Y   L+    + A Y+ LQS T
Sbjct: 1039 T---LREALQSKTNNIDHLSTILERNRKEYKSLLDDYNQLRARYKNLQSNT 1086


>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 316 RALLKYLANNERIVQKIAESYPVRRAAQLAVSVFY 420
           ++L  Y A +E    ++A ++P+R    L  SVFY
Sbjct: 149 QSLEGYKAASEIATAELAPTHPIRLGLALNFSVFY 183


>SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +2

Query: 110 CSHRVLELQKRLEIAKAQIRRLPGI-EFNKHDQLKQFELLRTQLRLKRELLQKYRNMCSF 286
           CS ++LE +  ++  KA I R+  I EFN      +F +  T + +      K  N  SF
Sbjct: 39  CSKQILEAETEIDPLKAHIDRILEIREFNADILEDEFHVDLTVIEV-NGFGDKIDNSASF 97

Query: 287 E 289
           E
Sbjct: 98  E 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,941,582
Number of Sequences: 5004
Number of extensions: 34371
Number of successful extensions: 107
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)