Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333A04f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_02_0049 + 10641363-10641563,10641640-10641750,10641893-106421...    30   1.3  
05_05_0195 + 23142830-23143714,23144288-23144314,23144657-231448...    27   6.9  
01_06_1201 - 35380338-35380496,35381200-35381322,35381521-353820...    27   9.1  

>01_02_0049 +
           10641363-10641563,10641640-10641750,10641893-10642123,
           10642253-10642357,10642546-10642704
          Length = 268

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 16/50 (32%), Positives = 33/50 (66%)
 Frame = +2

Query: 104 HECSHRVLELQKRLEIAKAQIRRLPGIEFNKHDQLKQFELLRTQLRLKRE 253
           HE   +VL+L+  L++++AQ+R+L  +   +   LK+   L+++L LK++
Sbjct: 191 HELKKKVLKLECTLKVSRAQLRKLHKMVERRDKPLKK---LQSRLPLKQQ 237


>05_05_0195 +
           23142830-23143714,23144288-23144314,23144657-23144866,
           23144976-23145242,23146290-23146376,23146495-23146553,
           23147166-23147768,23148063-23148192,23148570-23149100,
           23149636-23149743,23149911-23150456,23150957-23151079,
           23151494-23151709
          Length = 1263

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -1

Query: 341 LAKYLSSARRGIFT*MMSQMSTYSGTSVRVHALISAECGAVQ 216
           LA  L++A RG+F       S   G  ++ H  ++  C A+Q
Sbjct: 145 LADRLAAAHRGLFIPARPDKSVVEGQVMQRHDFVNQRCSALQ 186


>01_06_1201 -
           35380338-35380496,35381200-35381322,35381521-35382066,
           35382285-35382392,35382695-35383225,35383614-35383743,
           35384225-35385081,35385303-35385408,35387119-35387230,
           35389255-35389347,35389723-35389771,35389859-35389897,
           35390671-35390757,35391613-35391873,35391957-35392166,
           35392413-35393507
          Length = 1501

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -1

Query: 341 LAKYLSSARRGIFT*MMSQMSTYSGTSVRVHALISAECGAVQ 216
           LA  L++A RG+F       S   G  ++ H  ++  C A+Q
Sbjct: 209 LADRLAAAYRGLFVPARPDKSIVEGQVMQRHEFVNQRCAALQ 250


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,827,846
Number of Sequences: 37544
Number of extensions: 198083
Number of successful extensions: 485
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)