Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333A04f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   1.9  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    23   1.9  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   1.9  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   4.4  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   5.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   5.8  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    21   7.7  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    21   7.7  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 451 PHKVNKFIEFLKRFSANLK 507
           PH V K+I+ LK   A LK
Sbjct: 451 PHAVPKYIQRLKAIRATLK 469


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 451 PHKVNKFIEFLKRFSANLK 507
           PH V K+I+ LK   A LK
Sbjct: 366 PHAVPKYIQRLKAIRATLK 384


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 451 PHKVNKFIEFLKRFSANLK 507
           PH V K+I+ LK   A LK
Sbjct: 685 PHAVPKYIQRLKAIRATLK 703


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/11 (63%), Positives = 11/11 (100%)
 Frame = +2

Query: 365 LQSPTLYDEQL 397
           LQ+PTLYD+++
Sbjct: 534 LQAPTLYDDRI 544


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/11 (63%), Positives = 11/11 (100%)
 Frame = +2

Query: 365 LQSPTLYDEQL 397
           LQ+PTLYD+++
Sbjct: 539 LQAPTLYDDRV 549


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/11 (63%), Positives = 11/11 (100%)
 Frame = +2

Query: 365 LQSPTLYDEQL 397
           LQ+PTLYD+++
Sbjct: 539 LQAPTLYDDRV 549


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 427 KEKLSDVDPHKVNKFIEFLKRFSANLKEG 513
           K+K   V    V+K  +FL+ F  NL  G
Sbjct: 94  KDKYKQVFLGGVDKNTQFLRYFVGNLASG 122


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 427 KEKLSDVDPHKVNKFIEFLKRFSANLKEG 513
           K+K   V    V+K  +FL+ F  NL  G
Sbjct: 94  KDKYKQVFLGGVDKNTQFLRYFVGNLASG 122


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,758
Number of Sequences: 438
Number of extensions: 1984
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)