Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333A02f
         (400 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    26   2.5  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    26   2.5  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   4.3  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   5.7  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    25   5.7  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    24   7.6  

>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 167 ITQIIILRVSFLLHDVIPSPWNSIVNI 87
           +T  I+L + F+LHD   S W S+V I
Sbjct: 220 LTGTILLVIMFVLHDGSLSIWQSLVMI 246


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 15/57 (26%), Positives = 29/57 (50%)
 Frame = +1

Query: 19  KRCTGVRIPLAGTNFSNEIRTQQMFTIEFHGEGITSCNKNETRKIIICVITGGRTSC 189
           +RC+  +I + G+ F N I +   F+   HG+GI     +++R ++  +      SC
Sbjct: 219 RRCS--KINITGSVFDNFIPS--FFSFGTHGDGIKQIAVDDSRSLLYVLRETSSVSC 271


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 381 AHSPPDVKWLLEPIDIYNVNAPHTLR 304
           A  PP +K    P+DI N++A   L+
Sbjct: 224 ASQPPSIKTDASPVDIKNMDAAEKLK 249


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = +1

Query: 133 KNETRKIIICVITGGRT 183
           K+  +K+++C+I+ GRT
Sbjct: 229 KDAWKKVVVCIISDGRT 245


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -2

Query: 387 GRAHSPPDVKWLLEPIDIYN 328
           G  H P  V WLL P DIY+
Sbjct: 236 GPLHDPNTVMWLLRP-DIYS 254


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = -2

Query: 120 YSFTVEFNREHLLSTYFIR----KIGTRQRDSNTGASLQHE 10
           YS T++FN + LL  +F+      +  R R  N  A L HE
Sbjct: 56  YSLTIQFNFKSLLFLFFVSICVVILVVRYRYLNKYARLPHE 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,802,211
Number of Sequences: 5004
Number of extensions: 34938
Number of successful extensions: 71
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)