Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333A02f
         (400 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0304 - 2502760-2502774,2502844-2502921,2503035-2503103,250...    31   0.44 
07_01_0654 - 4900509-4900518,4900626-4900709,4900844-4901377,490...    31   0.44 
01_06_1749 - 39636951-39638102                                         27   5.5  

>08_01_0304 -
           2502760-2502774,2502844-2502921,2503035-2503103,
           2503200-2503289,2503400-2503517,2505548-2505678,
           2505756-2506025,2507175-2507308,2507635-2508088
          Length = 452

 Score = 30.7 bits (66), Expect = 0.44
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +1

Query: 4   GAFVLKRCTGVRIPLAGTNFSNEIRTQQMFTIEFHGE 114
           G  ++ RCTGV I   G N   +I T      +FHGE
Sbjct: 153 GGGLISRCTGVVIGWDGANKRAKILTAASVVCDFHGE 189


>07_01_0654 -
           4900509-4900518,4900626-4900709,4900844-4901377,
           4901462-4901619,4901703-4901832,4901918-4901999,
           4902097-4902230,4902314-4902410,4902512-4902788,
           4902881-4903024
          Length = 549

 Score = 30.7 bits (66), Expect = 0.44
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +1

Query: 46  LAGTNFSNEIRTQQMFTIEFHGEGITSC-NKNETRKIIICVITGGRTSCESARVGTTAPP 222
           L+GT+   +    ++  ++  G GIT+C  +NE +K    ++ G      + RV      
Sbjct: 28  LSGTSKRRDFTALELILVDEEGVGITACVGENEIQKFSTSIVEGHAYFLRNFRVSRQTKK 87

Query: 223 ISAV 234
           ++AV
Sbjct: 88  LNAV 91


>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 286 SIVTTAAPPFKPKRITA 236
           S+ + AAPPF P RIT+
Sbjct: 165 SVASAAAPPFDPSRITS 181


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,537,287
Number of Sequences: 37544
Number of extensions: 251339
Number of successful extensions: 473
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)