Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333A02f
         (400 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54282-2|CAA91053.1|   98|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z46794-6|CAA86776.1|  416|Caenorhabditis elegans Hypothetical pr...    27   5.0  
U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily ass...    27   5.0  
U23450-8|AAK31471.1|  350|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z73098-8|CAA97334.2|  303|Caenorhabditis elegans Hypothetical pr...    26   8.7  
AL110499-2|CAB57913.1|  297|Caenorhabditis elegans Hypothetical ...    26   8.7  
AL110499-1|CAB57912.1|  325|Caenorhabditis elegans Hypothetical ...    26   8.7  
AC084159-8|AAK39361.2|  655|Caenorhabditis elegans Hypothetical ...    26   8.7  

>Z54282-2|CAA91053.1|   98|Caenorhabditis elegans Hypothetical
           protein F52E10.2 protein.
          Length = 98

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 74  YVLNKCSRLNSTVKE*HRVIKMKP 145
           ++ + CS LN+T+++  R+IK  P
Sbjct: 49  FITHNCSSLNNTIRKVQRIIKKVP 72


>Z46794-6|CAA86776.1|  416|Caenorhabditis elegans Hypothetical
           protein R06F6.6 protein.
          Length = 416

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -3

Query: 281 SHNGCPTLQTETHYCFTAEIGGAVVPTRADSQEVLPPVITQIIILRV-SFLLHDVIPS 111
           S +  PT    T +    +I  A  PT ADS  + PP   + II ++  F  + ++P+
Sbjct: 211 SSDSTPTPTQATQFDMPTQIQTASPPTTADS-AIFPPTSPESIIQKIEQFPSNQILPN 267


>U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 162 protein.
          Length = 2643

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = -2

Query: 159 NYNFAGFIFITRCYSFTVEFNREHLLSTYFIRKIGTRQRDSN 34
           NY   G   I  C     +F  ++L  T   RKI T QR SN
Sbjct: 661 NYTVHGLTGIMNCEGMAYDFTSDNLYMTDQRRKIITVQRLSN 702


>U23450-8|AAK31471.1|  350|Caenorhabditis elegans Hypothetical
           protein C30B5.7 protein.
          Length = 350

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 141 FIFITRCYSFTVEFNREHLLSTYFIRK 61
           F+F + C +F + F+  HL S Y  RK
Sbjct: 171 FVFCSICVAFYLAFSENHLTSFYCGRK 197


>Z73098-8|CAA97334.2|  303|Caenorhabditis elegans Hypothetical
           protein T21C9.7 protein.
          Length = 303

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -3

Query: 266 PTLQTETHYCFTAEIGGAVVPTRADSQEVLPPVITQIII 150
           P      ++ ++  +GG    T A+S EVL  ++T +I+
Sbjct: 149 PIATNNAYFIYSPTLGGFATKTVANSTEVLNSLVTFMIV 187


>AL110499-2|CAB57913.1|  297|Caenorhabditis elegans Hypothetical
           protein Y62F5A.1b protein.
          Length = 297

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 130 NKNETRKIIICVITGGRTSCESARVGTTAPPISA 231
           N++ET KI+  ++TG      S R    APP SA
Sbjct: 192 NRDETAKIVKSILTG--EGIRSQRTMAPAPPSSA 223


>AL110499-1|CAB57912.1|  325|Caenorhabditis elegans Hypothetical
           protein Y62F5A.1a protein.
          Length = 325

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 130 NKNETRKIIICVITGGRTSCESARVGTTAPPISA 231
           N++ET KI+  ++TG      S R    APP SA
Sbjct: 192 NRDETAKIVKSILTG--EGIRSQRTMAPAPPSSA 223


>AC084159-8|AAK39361.2|  655|Caenorhabditis elegans Hypothetical
           protein Y73B3A.3 protein.
          Length = 655

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 14/69 (20%), Positives = 27/69 (39%)
 Frame = -3

Query: 296 LRSQYSHNGCPTLQTETHYCFTAEIGGAVVPTRADSQEVLPPVITQIIILRVSFLLHDVI 117
           +R+    + CP       +C  A +   ++P     ++     I  + IL  S L  D +
Sbjct: 259 VRNLPKRHSCPKYDRHEEFCGAANLDSPIMPRHLSDEQRSSDAIFNVPILVASGLAPDSL 318

Query: 116 PSPWNSIVN 90
                S++N
Sbjct: 319 RITLESLLN 327


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,319,905
Number of Sequences: 27780
Number of extensions: 208302
Number of successful extensions: 398
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)