Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333A02f
         (400 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   1.7  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   5.2  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   5.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       20   9.1  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            20   9.1  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -2

Query: 372 PPDVKWLLEPIDIYNVNAPHTLRYSSKVSV 283
           PPD  W  + +   N +  + +RY S V +
Sbjct: 104 PPDKVWKPDIVLFNNADGNYEVRYKSNVLI 133


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 366 DVKWLLEPIDIYNVNAPHTLRYSSKVSV*SQRL 268
           D+K     ID Y + A +T  Y +K +V  QRL
Sbjct: 187 DMKKTYNNIDYYLLAANYTGWYLTKHNVPEQRL 219


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 366 DVKWLLEPIDIYNVNAPHTLRYSSKVSV*SQRL 268
           D+K     ID Y + A +T  Y +K +V  QRL
Sbjct: 187 DMKKTYNNIDYYLLAANYTGWYLTKHNVPEQRL 219


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 144 GFIFITRCYSFTVEFNREHLLS 79
           GF+  + C S T   ++EH+L+
Sbjct: 627 GFLNNSMCTSTTTSPDKEHVLA 648


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 5/14 (35%), Positives = 11/14 (78%)
 Frame = -2

Query: 369 PDVKWLLEPIDIYN 328
           P++ WL + I++Y+
Sbjct: 52  PEITWLKDGIELYH 65


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,809
Number of Sequences: 438
Number of extensions: 2890
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)