Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS332H12f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism... 28 0.97
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 27 2.2
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 3.0
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 26 3.0
SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr 3|||... 26 3.0
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos... 26 3.9
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 25 5.2
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch... 25 6.8
SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyc... 25 9.0
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 25 9.0
>SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 27.9 bits (59), Expect = 0.97
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = -2
Query: 493 HSSRAPYSGDAKDSGDITMAGGKPSAEDDVTSEELSSSIRSGKPPLLDQRRLMSKSASYA 314
H A G+ K+ G+ G P + VTS+ ++ R+G PL ++ L + Y
Sbjct: 52 HIDTAHIYGNEKEIGEGIRESGVPRTDIWVTSKLWCNAHRAGLVPLALEKTLQDLNLEYI 111
Query: 313 PASVI 299
A +I
Sbjct: 112 DAYLI 116
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 26.6 bits (56), Expect = 2.2
Identities = 27/114 (23%), Positives = 44/114 (38%), Gaps = 4/114 (3%)
Frame = -2
Query: 490 SSRAPYSGDAKDSGDITMAGGKPSAEDDVTSEELSSSIRSGKPPLLDQRRLMSKSASYAP 311
SS S + S T PS+ +S SSS S S S+S +
Sbjct: 133 SSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 192
Query: 310 ASVITEGHPPT*A----FTSLFSRTKLSKRVSTDIHHSSARPFKANDTLSTFST 161
+S + + + TS S + S S+ SS+RP ++ ++T S+
Sbjct: 193 SSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSS 246
>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 386
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -2
Query: 490 SSRAPYSGDAKDSGDITMAGGKPSAEDDVTSEELSSSIRSGK 365
SS +AK+SG T +PS++ D+ +L +R+G+
Sbjct: 59 SSDITRHSNAKNSGKDTQFYEEPSSKQDIELHKLHEKLRNGQ 100
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 26.2 bits (55), Expect = 3.0
Identities = 14/59 (23%), Positives = 28/59 (47%)
Frame = -2
Query: 334 SKSASYAPASVITEGHPPT*AFTSLFSRTKLSKRVSTDIHHSSARPFKANDTLSTFSTL 158
+ S Y P++V+T + T +TS + +S + + ++ P ST+ST+
Sbjct: 1448 TSSTQYEPSTVVTTSYYTTSVYTSAPATETVSSTEAPESSTVTSNPIYQGSGTSTWSTV 1506
>SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 319
Score = 26.2 bits (55), Expect = 3.0
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -2
Query: 250 TKLSKRVSTDIHHSSARPFKANDTLSTFSTLIHLLVLKL 134
+KLSK+ + HHSS + ++ S L HL L+L
Sbjct: 138 SKLSKKETLVAHHSSVLWYLQSELSDVSSVLYHLQDLRL 176
>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 395 FRSDIVFGTGFATGHGYVAGILGVARVWSPRAMEL 499
F +DIV TG Y+A V +++ PRA+++
Sbjct: 454 FEADIVEATGVVGSDPYLAPETLVRKLYDPRAVDI 488
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 25.4 bits (53), Expect = 5.2
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +3
Query: 210 EWCMSVETRLDSLVREKSEVKAYVGGCPSVITDAGAYDALFDMRRRWSN 356
E C S+E L E +E+ AY+ GCP I D A + +SN
Sbjct: 623 ELCPSIE----ELTLEGNEI-AYLTGCPVTIRDLNAVENRLSSLTSFSN 666
>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1316
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 220 IHHSSARPFKANDTLSTFSTLIHLLVLKLD 131
IHH+ AR +AND L+ + L+ LD
Sbjct: 206 IHHAEARAQEANDLLNEQRNALQSLLDSLD 235
>SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 218
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/16 (68%), Positives = 14/16 (87%), Gaps = 1/16 (6%)
Frame = -3
Query: 495 SIARGLHTRAT-PRIP 451
SIARG+HT+AT P +P
Sbjct: 17 SIARGVHTKATLPPLP 32
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 490 SSRAPYSGDAKDSGDITM 437
SSR YS D +DSGD+ +
Sbjct: 196 SSRRVYSVDLRDSGDVQL 213
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,019,633
Number of Sequences: 5004
Number of extensions: 36984
Number of successful extensions: 129
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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