Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332H12f
         (521 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M74078-1|AAA28498.1|  878|Drosophila melanogaster ecdysone recep...    41   9e-04
BT015234-1|AAT94463.1|  878|Drosophila melanogaster RE06878p pro...    41   9e-04
BT012469-1|AAS93740.1|  878|Drosophila melanogaster RE33854p pro...    41   9e-04
AE013599-153|AAF57280.2|  878|Drosophila melanogaster CG1765-PB,...    41   9e-04
AJ556818-1|CAD89223.1| 2162|Drosophila melanogaster SMG1 protein...    29   3.8  
AE014298-963|AAF46207.2| 3218|Drosophila melanogaster CG32743-PA...    29   3.8  
AY052127-1|AAK93551.1| 1062|Drosophila melanogaster SD07741p pro...    28   6.7  
AE014296-326|AAF47543.2| 1062|Drosophila melanogaster CG7971-PA,...    28   6.7  

>M74078-1|AAA28498.1|  878|Drosophila melanogaster ecdysone receptor
           protein.
          Length = 878

 Score = 41.1 bits (92), Expect = 9e-04
 Identities = 22/53 (41%), Positives = 26/53 (49%)
 Frame = +3

Query: 336 MRRRWSNNGGFPLRMLXXXXXXXXXXXALGLPPAMVMSPESLASPEYGALELW 494
           M+RRWSNNGGF                 L LP  + MSP SL S +Y   +LW
Sbjct: 1   MKRRWSNNGGFMRLPEESSSEVTSSSNGLVLPSGVNMSPSSLDSHDYCDQDLW 53


>BT015234-1|AAT94463.1|  878|Drosophila melanogaster RE06878p
           protein.
          Length = 878

 Score = 41.1 bits (92), Expect = 9e-04
 Identities = 22/53 (41%), Positives = 26/53 (49%)
 Frame = +3

Query: 336 MRRRWSNNGGFPLRMLXXXXXXXXXXXALGLPPAMVMSPESLASPEYGALELW 494
           M+RRWSNNGGF                 L LP  + MSP SL S +Y   +LW
Sbjct: 1   MKRRWSNNGGFMRLPEESSSEVTSSSNGLVLPSGVNMSPSSLDSHDYCDQDLW 53


>BT012469-1|AAS93740.1|  878|Drosophila melanogaster RE33854p
           protein.
          Length = 878

 Score = 41.1 bits (92), Expect = 9e-04
 Identities = 22/53 (41%), Positives = 26/53 (49%)
 Frame = +3

Query: 336 MRRRWSNNGGFPLRMLXXXXXXXXXXXALGLPPAMVMSPESLASPEYGALELW 494
           M+RRWSNNGGF                 L LP  + MSP SL S +Y   +LW
Sbjct: 1   MKRRWSNNGGFMRLPEESSSEVTSSSNGLVLPSGVNMSPSSLDSHDYCDQDLW 53


>AE013599-153|AAF57280.2|  878|Drosophila melanogaster CG1765-PB,
           isoform B protein.
          Length = 878

 Score = 41.1 bits (92), Expect = 9e-04
 Identities = 22/53 (41%), Positives = 26/53 (49%)
 Frame = +3

Query: 336 MRRRWSNNGGFPLRMLXXXXXXXXXXXALGLPPAMVMSPESLASPEYGALELW 494
           M+RRWSNNGGF                 L LP  + MSP SL S +Y   +LW
Sbjct: 1   MKRRWSNNGGFMRLPEESSSEVTSSSNGLVLPSGVNMSPSSLDSHDYCDQDLW 53


>AJ556818-1|CAD89223.1| 2162|Drosophila melanogaster SMG1 protein
           protein.
          Length = 2162

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 416 GTGFATGHGYVAGILGVARVWSP 484
           G G ATG G +AG+ G   +WSP
Sbjct: 52  GRGGATGSGNIAGLGGSESMWSP 74


>AE014298-963|AAF46207.2| 3218|Drosophila melanogaster CG32743-PA
           protein.
          Length = 3218

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 416 GTGFATGHGYVAGILGVARVWSP 484
           G G ATG G +AG+ G   +WSP
Sbjct: 52  GRGGATGSGNIAGLGGSESMWSP 74


>AY052127-1|AAK93551.1| 1062|Drosophila melanogaster SD07741p protein.
          Length = 1062

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -2

Query: 493  HSSRAPYSGDAKDSGDITMAGGKPSAEDDVTSEELSSSIRSGKPPLLDQRRLMSK 329
            HSSR   S ++  SG  +   G  S++    S  +    R G P  LD+RR+ S+
Sbjct: 1003 HSSRTSCSTNSS-SGSSSSGSGSGSSQSGSRSPSIPR--RRGSPSFLDRRRITSR 1054


>AE014296-326|AAF47543.2| 1062|Drosophila melanogaster CG7971-PA,
            isoform A protein.
          Length = 1062

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -2

Query: 493  HSSRAPYSGDAKDSGDITMAGGKPSAEDDVTSEELSSSIRSGKPPLLDQRRLMSK 329
            HSSR   S ++  SG  +   G  S++    S  +    R G P  LD+RR+ S+
Sbjct: 1003 HSSRTSCSTNSS-SGSSSSGSGSGSSQSGSRSPSIPR--RRGSPSFLDRRRITSR 1054


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,638,789
Number of Sequences: 53049
Number of extensions: 439132
Number of successful extensions: 1439
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1434
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1929233664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)