Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332H12f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025716-12|AAK39604.1|  704|Caenorhabditis elegans Hypothetical...    29   1.5  
Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical pr...    29   2.0  
L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family...    29   2.7  
Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical p...    28   4.7  
Z77658-2|CAB01156.1|  457|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ...    28   4.7  
U00058-5|AAA50730.1|  309|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z93382-4|CAB07614.1|  202|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>AC025716-12|AAK39604.1|  704|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.15 protein.
          Length = 704

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 20/72 (27%), Positives = 28/72 (38%)
 Frame = -2

Query: 403 TSEELSSSIRSGKPPLLDQRRLMSKSASYAPASVITEGHPPT*AFTSLFSRTKLSKRVST 224
           T +  S ++ +GK P   + +L  KS S  P    T  HP      +L    +  K    
Sbjct: 205 TEDASSDNLYNGKVPSGRKSKLQKKSTSQQPVQKTTRSHPSVYLQPTLARTDRSLKLPPA 264

Query: 223 DIHHSSARPFKA 188
           D      RP KA
Sbjct: 265 DQKSVDERPRKA 276


>Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical protein
            C05C9.3 protein.
          Length = 1225

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/57 (24%), Positives = 28/57 (49%)
 Frame = -1

Query: 464  RQGFRRHNHGRWQTQCRRRCHF*RALFKHSQREATVIRPAASHVEERVIRSSIRDYR 294
            R   +RH HG+   Q  +R H  + ++K   +    I+P  + V++    +  RD++
Sbjct: 1135 RHDVQRHIHGQTNYQQNQRQHSQQQVYKFHMQPQLPIQPVPNQVQQPNFNNPNRDFQ 1191


>L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family
            protein 3 protein.
          Length = 3343

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -2

Query: 514  VIPSS*LHSSRAPYSGDAKDSGDI-TMAGGKPSAEDDVTSEELSSSIRSGKPP 359
            V+P    H +R+       D+ D+ T+ G K ++ DD+T    SSS R  +PP
Sbjct: 3275 VMPRRRGHINRSMVKSPDDDTYDVATVYGMKSTSTDDITHIYTSSSSRRYQPP 3327


>Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical
            protein F40G12.3 protein.
          Length = 1099

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 23/84 (27%), Positives = 35/84 (41%)
 Frame = -2

Query: 421  SAEDDVTSEELSSSIRSGKPPLLDQRRLMSKSASYAPASVITEGHPPT*AFTSLFSRTKL 242
            S+E   TS   +S   SG        +  S   S A +S +T G           + T  
Sbjct: 855  SSELTPTSPGSASKTTSGMAKRASSSKHPSAVTSSARSSAVTSGLTNNSTEKKTQNSTTA 914

Query: 241  SKRVSTDIHHSSARPFKANDTLST 170
            +  VST + +SSA   K+++T  T
Sbjct: 915  ASSVSTQVPNSSASSSKSSETTRT 938


>Z77658-2|CAB01156.1|  457|Caenorhabditis elegans Hypothetical
           protein F14D7.2 protein.
          Length = 457

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 23/87 (26%), Positives = 39/87 (44%)
 Frame = -2

Query: 463 AKDSGDITMAGGKPSAEDDVTSEELSSSIRSGKPPLLDQRRLMSKSASYAPASVITEGHP 284
           AK   +IT   G P  E     +     +R  +P L  + + + +S  Y+P+   T+  P
Sbjct: 269 AKKLDNITEESGTPEEELMSGRDSEDEGLRRKRPKLQVEGKDVKRSDCYSPSECSTQ--P 326

Query: 283 PT*AFTSLFSRTKLSKRVSTDIHHSSA 203
            + + T+L   TK  K  S D+  + A
Sbjct: 327 SSGSSTALIVPTKAGKS-SDDLRKARA 352


>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
            protein F55F10.1 protein.
          Length = 4368

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -2

Query: 451  GDITMAGGKPSAEDDVTSEELSSSIRSGKPPLLDQRRLMSKSASYAPASVITE 293
            G   +AG   + +DDVT  E    +   K   +D+  L S  + Y P  VITE
Sbjct: 942  GYFLLAGRCRNEKDDVTVVETLEKVIKRK---IDKEALFSLDSPYMPRDVITE 991


>U00058-5|AAA50730.1|  309|Caenorhabditis elegans Hypothetical
           protein W03A5.4 protein.
          Length = 309

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -2

Query: 253 RTKLSKRVSTDIHHSSARPFKANDTLSTFSTLIHLLVLK 137
           +TK++   STD+ H+   P K +D+L       HLLV K
Sbjct: 132 QTKMNA-ASTDLEHADDYPEKCSDSLRAAHGNAHLLVRK 169


>Z93382-4|CAB07614.1|  202|Caenorhabditis elegans Hypothetical
           protein F45G2.5 protein.
          Length = 202

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 355 ITVASRCECLKRALQK*HRLRHWVC 429
           I V  RC C +  ++K    R WVC
Sbjct: 37  ICVRGRCRCSENTIRKKSASREWVC 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,217,679
Number of Sequences: 27780
Number of extensions: 212212
Number of successful extensions: 647
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)