Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332H10f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.2  
SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr 1||...    25   6.8  
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    25   6.8  

>SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 455

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 18/69 (26%), Positives = 28/69 (40%)
 Frame = +1

Query: 193 LDRETKQDPADSPVHHHRVATQSFLEMERGPAAEHRPPSVAEKLMDHMADKFTDSESDAD 372
           LD+E K  P  + V+        +LE ++   A    P    K M+    +      D +
Sbjct: 255 LDKEAKVRPRTNDVYEDFGLCNGYLEAKKLAKANLAEPITEAKKMNKENKQENVGAGDDE 314

Query: 373 TAGESPLHR 399
            A ESP+ R
Sbjct: 315 DASESPMVR 323


>SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 335

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +2

Query: 254 LRVSWRWNVGPQRNIGRLPSPKSLWTTWPTNLPTVSQTPILQESRP 391
           LR  W+     +  +GRLP   S + T+PT     S    L  S P
Sbjct: 141 LRPQWKGFERLKAALGRLPGKWSFYLTFPTEKVDQSYQNNLSHSLP 186


>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 274 ERGPAAEHRPPSVAEKLMDHMADKFTDSESDADTAGES 387
           E   A+  RPP +     DH  DK    ESDA ++ +S
Sbjct: 153 ESNTASTIRPPWIGNN--DHATDKENLLESDASSSNDS 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.126    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,967,020
Number of Sequences: 5004
Number of extensions: 37439
Number of successful extensions: 107
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)