Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS332H10f
(521 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF303585-1|AAO32941.1| 959|Homo sapiens NCOR isoform c protein. 33 0.80
AF087856-1|AAP97166.1| 2343|Homo sapiens nuclear receptor co-rep... 33 0.80
AF044209-1|AAC33550.1| 2440|Homo sapiens nuclear receptor co-rep... 33 0.80
AB019524-1|BAA75814.1| 1467|Homo sapiens nuclear receptor co-rep... 33 0.80
BC022243-1|AAH22243.1| 937|Homo sapiens MGC22014 protein protein. 31 2.4
AC073263-1|AAX93057.1| 937|Homo sapiens unknown protein. 31 2.4
AL833963-1|CAD38811.1| 453|Homo sapiens hypothetical protein pr... 29 9.9
AK074976-1|BAC11327.1| 267|Homo sapiens protein ( Homo sapiens ... 29 9.9
>AF303585-1|AAO32941.1| 959|Homo sapiens NCOR isoform c protein.
Length = 959
Score = 32.7 bits (71), Expect = 0.80
Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Frame = +1
Query: 169 TRRMISEHLDRETKQDPADSP--VHHHRVATQSFLEMERGPAAEHRPPSVAEKLMDHMAD 342
TR++ S+ RE +DS + HR T S PA+ PP EKL + +
Sbjct: 458 TRQIASDKDARERGSQSSDSSSSLSSHRYETPSDAIEVISPASSPAPPQ--EKLQTYQPE 515
Query: 343 --KFTDSESDADTAGESPLHRPEPRVE 417
K +E+D E PLH P+ E
Sbjct: 516 VVKANQAENDPTRQYEGPLHHYRPQQE 542
>AF087856-1|AAP97166.1| 2343|Homo sapiens nuclear receptor
co-repressor protein.
Length = 2343
Score = 32.7 bits (71), Expect = 0.80
Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Frame = +1
Query: 169 TRRMISEHLDRETKQDPADSP--VHHHRVATQSFLEMERGPAAEHRPPSVAEKLMDHMAD 342
TR++ S+ RE +DS + HR T S PA+ PP EKL + +
Sbjct: 1842 TRQIASDKDARERGSQSSDSSSSLSSHRYETPSDAIEVISPASSPAPPQ--EKLQTYQPE 1899
Query: 343 --KFTDSESDADTAGESPLHRPEPRVE 417
K +E+D E PLH P+ E
Sbjct: 1900 VVKANQAENDPTRQYEGPLHHYRPQQE 1926
>AF044209-1|AAC33550.1| 2440|Homo sapiens nuclear receptor
co-repressor N-CoR protein.
Length = 2440
Score = 32.7 bits (71), Expect = 0.80
Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Frame = +1
Query: 169 TRRMISEHLDRETKQDPADSP--VHHHRVATQSFLEMERGPAAEHRPPSVAEKLMDHMAD 342
TR++ S+ RE +DS + HR T S PA+ PP EKL + +
Sbjct: 1938 TRQIASDKDARERGSQSSDSSSSLSSHRYETPSDAIEVISPASSPAPPQ--EKLQTYQPE 1995
Query: 343 --KFTDSESDADTAGESPLHRPEPRVE 417
K +E+D E PLH P+ E
Sbjct: 1996 VVKANQAENDPTRQYEGPLHHYRPQQE 2022
>AB019524-1|BAA75814.1| 1467|Homo sapiens nuclear receptor
co-repressor protein.
Length = 1467
Score = 32.7 bits (71), Expect = 0.80
Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Frame = +1
Query: 169 TRRMISEHLDRETKQDPADSP--VHHHRVATQSFLEMERGPAAEHRPPSVAEKLMDHMAD 342
TR++ S+ RE +DS + HR T S PA+ PP EKL + +
Sbjct: 965 TRQIASDKDARERGSQSSDSSSSLSSHRYETPSDAIEVISPASSPAPPQ--EKLQTYQPE 1022
Query: 343 --KFTDSESDADTAGESPLHRPEPRVE 417
K +E+D E PLH P+ E
Sbjct: 1023 VVKANQAENDPTRQYEGPLHHYRPQQE 1049
>BC022243-1|AAH22243.1| 937|Homo sapiens MGC22014 protein protein.
Length = 937
Score = 31.1 bits (67), Expect = 2.4
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +3
Query: 225 FTGTPSSRG--HSEFLGDGTWARSGTSAAFRRR 317
+ G PSS S+FLG G W SG+S +F ++
Sbjct: 428 YYGFPSSNPVFPSQFLGPGAWGHSGSSGSFEKK 460
>AC073263-1|AAX93057.1| 937|Homo sapiens unknown protein.
Length = 937
Score = 31.1 bits (67), Expect = 2.4
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +3
Query: 225 FTGTPSSRG--HSEFLGDGTWARSGTSAAFRRR 317
+ G PSS S+FLG G W SG+S +F ++
Sbjct: 428 YYGFPSSNPVFPSQFLGPGAWGHSGSSGSFEKK 460
>AL833963-1|CAD38811.1| 453|Homo sapiens hypothetical protein
protein.
Length = 453
Score = 29.1 bits (62), Expect = 9.9
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +2
Query: 278 VGPQ-RNIGRLPSPKSLWTTWPTNLPTVSQTPILQESRPSIGPSRGSNSRSLALRHRNHR 454
+GP+ R+ PSP TWP++ P S + RPS +R + + + R
Sbjct: 24 LGPRCRSCSPTPSP-----TWPSSWPPPSSSSWQLWERPSCPTTRAAPLMASSSRKAWIS 78
Query: 455 CLKLTTRHRCWPPRPLR 505
+L++ CWP +R
Sbjct: 79 SARLSSSCACWPLAGIR 95
>AK074976-1|BAC11327.1| 267|Homo sapiens protein ( Homo sapiens
cDNA FLJ90495 fis, clone NT2RP3003729. ).
Length = 267
Score = 29.1 bits (62), Expect = 9.9
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 10 SSHPRTRVCTAPYRSLILLFCKVSWRAQA 96
+ HPR R C PY +++++F W A
Sbjct: 233 AEHPRGRHCPCPYSTVVIVFAPNLWGRHA 261
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.315 0.126 0.380
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,624,687
Number of Sequences: 237096
Number of extensions: 1748335
Number of successful extensions: 5241
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5238
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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