Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332H10f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67738-2|CAA91546.2|  482|Caenorhabditis elegans Hypothetical pr...    31   0.50 
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr...    31   0.66 
U32305-18|AAK18852.2|  719|Caenorhabditis elegans Hypothetical p...    30   0.87 
Z70203-2|CAA94105.1|  685|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U80437-19|AAB37630.2|  580|Caenorhabditis elegans Conserved olig...    28   3.5  
Z68108-12|CAF31492.1| 2101|Caenorhabditis elegans Hypothetical p...    27   6.2  
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p...    27   6.2  
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr...    27   6.2  
U29614-2|AAM54190.1| 1020|Caenorhabditis elegans Temporarily ass...    27   6.2  
U29614-1|AAM54191.1| 1061|Caenorhabditis elegans Temporarily ass...    27   6.2  
AY390541-1|AAQ94953.1|  521|Caenorhabditis elegans SMA-9 class I...    27   6.2  

>Z67738-2|CAA91546.2|  482|Caenorhabditis elegans Hypothetical
           protein W03G11.3 protein.
          Length = 482

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
 Frame = +2

Query: 227 HRYTIIAWPLRVSWRWN---VGPQRNI 298
           H      WP R SW WN   +GP+R+I
Sbjct: 120 HHEGFTMWPSRTSWNWNSMDIGPKRDI 146


>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical protein
            W01F3.3 protein.
          Length = 2175

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = -2

Query: 391  GATLLQYRRLTHCR*ICRPCGP*AFRRRKAADVPLRAHVPSPRNSEWPRDDGVPVNPPG 215
            G    Q+  L+ C  IC P GP   +       P  A V  P  ++ P+   +P+  PG
Sbjct: 1321 GGNTNQFETLSECERICTPSGP---KTPTLPPTPTPATVAVPVPAQTPKVPQLPIGAPG 1376


>U32305-18|AAK18852.2|  719|Caenorhabditis elegans Hypothetical
           protein B0336.3 protein.
          Length = 719

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +3

Query: 210 TRPGGFTGTPSSRGHSEFLGDGTWARSGTSAAFRR 314
           T+PG F G P  RG     G G +AR G + A  R
Sbjct: 331 TQPGSFRGAP--RGRGNIRGRGGFARGGFTGAINR 363


>Z70203-2|CAA94105.1|  685|Caenorhabditis elegans Hypothetical
           protein C05G5.2 protein.
          Length = 685

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = +1

Query: 235 HHHRVATQSFLEMERGPAAEHRPPSVAEKLMDHMADKFTDSESDADTAGESPLHRPE 405
           H+ ++ ++S + +E+GP       SV  ++   +A K    +SD+DT  E PL   E
Sbjct: 256 HNEKLVSESAMPIEKGPTRPAAMASVIGEMKKKVAAKAKLLDSDSDTDRE-PLGSSE 311


>U80437-19|AAB37630.2|  580|Caenorhabditis elegans Conserved
           oligomeric golgi (cog)component protein 5 protein.
          Length = 580

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = +1

Query: 187 EHLDRETKQDPADSPVHHHRVATQSFLEMERGPAAEHRPPSVAEKLMDHMADKFTDSESD 366
           E +D ET Q+ +DSP    +  T+  +E+E G   E  P        D   +K  + E D
Sbjct: 172 EKVDAETAQE-SDSPQEAEKEKTEPQVELENGGQEEDEPD------RDESIEKQPEKEDD 224

Query: 367 AD 372
            D
Sbjct: 225 GD 226


>Z68108-12|CAF31492.1| 2101|Caenorhabditis elegans Hypothetical
            protein T05A10.1e protein.
          Length = 2101

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +2

Query: 341  TNLPTVSQTPILQESRPSIGPSRGSNS--RSLALRHRNHRCLKLTTRHRCWPPRPLRLS 511
            TN P+ +Q P+   S PS+ P+   +S   S +++ R    L   T     P   LR+S
Sbjct: 1801 TNTPSTAQFPVGVVSTPSVFPTPNPSSPLESSSMQFRKKAVLDSATHANDMPRTILRIS 1859


>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
            protein 44, isoform f protein.
          Length = 6994

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 7/77 (9%)
 Frame = +1

Query: 157  SATRTRRMISEHLDRETKQDPADSPVHHHRVATQ-------SFLEMERGPAAEHRPPSVA 315
            S T TR      LD E   +PA SP+    + T+       S ++ E G +  H P  + 
Sbjct: 3041 STTETREFDRPELDSERLSEPAQSPMEVSPITTEENIVRPSSSVKSEYG-SEGHVPSVIE 3099

Query: 316  EKLMDHMADKFTDSESD 366
             K    +  +F D + D
Sbjct: 3100 TKTTTTVTREFYDDDQD 3116


>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
            protein.
          Length = 6994

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 7/77 (9%)
 Frame = +1

Query: 157  SATRTRRMISEHLDRETKQDPADSPVHHHRVATQ-------SFLEMERGPAAEHRPPSVA 315
            S T TR      LD E   +PA SP+    + T+       S ++ E G +  H P  + 
Sbjct: 3041 STTETREFDRPELDSERLSEPAQSPMEVSPITTEENIVRPSSSVKSEYG-SEGHVPSVIE 3099

Query: 316  EKLMDHMADKFTDSESD 366
             K    +  +F D + D
Sbjct: 3100 TKTTTTVTREFYDDDQD 3116


>U29614-2|AAM54190.1| 1020|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 279, isoform a protein.
          Length = 1020

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 298 DVPLRAHVPSPRNSEWPRDDGVPVNPPGLV 209
           D+ +R  VP P+  E  R   VP NPP L+
Sbjct: 462 DLTIRVVVP-PKRREGKRKSEVPANPPALL 490


>U29614-1|AAM54191.1| 1061|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 279, isoform b protein.
          Length = 1061

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 298 DVPLRAHVPSPRNSEWPRDDGVPVNPPGLV 209
           D+ +R  VP P+  E  R   VP NPP L+
Sbjct: 503 DLTIRVVVP-PKRREGKRKSEVPANPPALL 531


>AY390541-1|AAQ94953.1|  521|Caenorhabditis elegans SMA-9 class Ib
           protein.
          Length = 521

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +2

Query: 341 TNLPTVSQTPILQESRPSIGPSRGSNS--RSLALRHRNHRCLKLTTRHRCWPPRPLRLS 511
           TN P+ +Q P+   S PS+ P+   +S   S +++ R    L   T     P   LR+S
Sbjct: 221 TNTPSTAQFPVGVVSTPSVFPTPNPSSPLESSSMQFRKKAVLDSATHANDMPRTILRIS 279


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.315    0.126    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,494,050
Number of Sequences: 27780
Number of extensions: 238864
Number of successful extensions: 781
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)