Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS332H09f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom... 28 0.73
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |... 28 0.97
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ... 27 1.3
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch... 27 2.2
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 26 3.0
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 25 5.2
SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pom... 25 6.8
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 25 9.0
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 25 9.0
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 25 9.0
>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 28.3 bits (60), Expect = 0.73
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = -3
Query: 279 FSRMSSISVLFGAGSAALGSCRASKLRRS--FPPL*NDG 169
F+ V FG+G+ +GS R +K ++S PP NDG
Sbjct: 511 FAEAVKKEVTFGSGNTNIGSLRQTKFKQSNYTPPELNDG 549
>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 652
Score = 27.9 bits (59), Expect = 0.97
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +2
Query: 398 VSGARNG-EMMDTFDFLIKSLSSANNYVSMLTREQLSVL 511
V AR G +++D DF + S SSA + +LT +Q +++
Sbjct: 210 VESARAGLDLLDQSDFSLTSPSSAKEFKQLLTLKQSTII 248
>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 27.5 bits (58), Expect = 1.3
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = -3
Query: 297 VPLSRMFSRMSSISVLFGAGSAALGSCRASKLRRSFPPL*NDGVVAENDP 148
VP + +F+R S I + G +A+ +CR++ RS P ND + + P
Sbjct: 65 VPCTYLFARTSLILGRYKQGISAVEACRSN--WRSIQPNINDSISSRGHP 112
>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
3|||Manual
Length = 872
Score = 26.6 bits (56), Expect = 2.2
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 407 ARNGEMMDTFDFLIKSLSSANNYVSMLTREQLSVLRS 517
+RN +++ F ++ S N YVSM +Q +RS
Sbjct: 255 SRNLDLLRKFSHVLHDFSGPNAYVSMYLAKQTDFVRS 291
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 26.2 bits (55), Expect = 3.0
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +2
Query: 203 NLLARQEPRAADPAPNSTEMEDILLNMRLNGTDPLFDDMDPNHNYFLGGRPES 361
N+L E R + P + ++D +N R N P+F +DP H + G +S
Sbjct: 745 NILYFAENRNS-PVLGTIHLKDAQVN-RYNANLPIFSIIDPPHEFLTGENYQS 795
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 25.4 bits (53), Expect = 5.2
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +2
Query: 311 DDMDPNHNYFLGGRPESVASSNLWNDNSSVSGARNGEMMDTFDFLIKSLSSANN 472
+D P+ N+ G S A+S+ ND SS G ++ F L + +S+NN
Sbjct: 331 NDSIPSQNFKSGKTFVSNANSSNSNDGSSSKSLDVGSFVNAFKQLNVNDNSSNN 384
>SPCC622.14 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 309
Score = 25.0 bits (52), Expect = 6.8
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = +2
Query: 311 DDMDPNHNYFLGGRPESVASSNLWNDNSSVSGARNGEMMDTFDF-LIKSLSSANNYVSML 487
DD+ P+ GGR + SSN N NSS G +D + +LS N S
Sbjct: 167 DDLPPSQ----GGRYQGFGSSNSVNPNSSARN-NGGSFLDQLSSNPVSALSHGWNMFSRS 221
Query: 488 TREQL 502
+Q+
Sbjct: 222 VSQQI 226
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +3
Query: 261 WKTFY*TCDSMAL-TRYSMIWIQIITTFW 344
+KTFY + L T ++ IW+ TT+W
Sbjct: 470 YKTFYESRSWFHLVTNFNRIWVIHFTTYW 498
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 959
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = -3
Query: 495 SRVNIDT*LLADDKLLMRKSKVSIISPFLAPDTLELSFHRLDDATDSGR 349
+++ + T L ++DK + S +I + L+ S +RL SGR
Sbjct: 5 TQLELFTKLTSNDKAIRLSSAAQLIDSLSNEEELKYSLNRLTKGLSSGR 53
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +3
Query: 252 APKWKTFY*TCDSMALTRYSMIWIQIITTFWG--GVQSPW 365
A WK + T D + + + M+ + I T F+G G Q W
Sbjct: 394 AASWKYYKYTIDGIYIIYFDMLALIIPTIFFGFFGSQGHW 433
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,162,129
Number of Sequences: 5004
Number of extensions: 42870
Number of successful extensions: 132
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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