Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS332H09f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1099 - 26072301-26072468,26072642-26072751,26072966-260730... 32 0.24
01_06_0352 + 28638453-28639391,28639486-28640034,28640388-286411... 32 0.24
02_01_0110 + 819022-819264,819996-820761,820846-820920,821276-82... 29 1.7
05_04_0106 - 18034965-18034975,18035128-18035323,18036320-180364... 28 5.2
02_05_1141 - 34388867-34388950,34389139-34389189,34389273-343893... 28 5.2
01_07_0139 - 41385823-41386656 27 6.9
01_07_0138 - 41383304-41384458 27 6.9
01_07_0137 - 41381294-41382433 27 6.9
06_01_0247 + 1863549-1863978,1865001-1865261,1865346-1866221,186... 27 9.1
03_02_0829 - 11599665-11600364,11600853-11601076,11601786-116020... 27 9.1
01_06_0559 + 30235379-30235584,30235679-30235814,30235885-30235938 27 9.1
>12_02_1099 -
26072301-26072468,26072642-26072751,26072966-26073014,
26073081-26073495,26073604-26074019
Length = 385
Score = 32.3 bits (70), Expect = 0.24
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = +2
Query: 317 MDPNHNYFLGGRPESVASSNLWNDNSSVSGARNGEM----MDTFDFLIKSLS 460
MDPN F P S A+ N+W+ S SG +G + +DT D ++ S
Sbjct: 1 MDPNGFDFFSQDPISSAAGNIWSSQPSASGPSHGSVPRAGVDTLDLNTQAAS 52
>01_06_0352 +
28638453-28639391,28639486-28640034,28640388-28641195,
28641279-28641389,28641556-28641683
Length = 844
Score = 32.3 bits (70), Expect = 0.24
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = +2
Query: 317 MDPNHNYFLGGRPESVASSNLWNDNSSVSGARNGEM----MDTFDFLIKSLS 460
MDPN F P S A+ N+W+ S SG +G + +DT D ++ S
Sbjct: 1 MDPNGFDFFSQDPISSAAGNIWSSQPSASGPSHGSVPRAGVDTLDLNTQAAS 52
>02_01_0110 +
819022-819264,819996-820761,820846-820920,821276-821445,
821644-821742,821835-822134,822211-822318,822443-822514,
822580-822666,822887-822958,823063-823152,823795-823902,
824015-824083,824177-824242,824395-824418
Length = 782
Score = 29.5 bits (63), Expect = 1.7
Identities = 19/72 (26%), Positives = 34/72 (47%)
Frame = +2
Query: 188 GNDLLNLLARQEPRAADPAPNSTEMEDILLNMRLNGTDPLFDDMDPNHNYFLGGRPESVA 367
G D LA+ + ADP +S ++E+++ N + D L + MD N PE +
Sbjct: 72 GEDPKLTLAKILLKKADPDASSLDVENLIANKKAKLDDILREFMDANRQEQTSESPEETS 131
Query: 368 SSNLWNDNSSVS 403
+ ++ S+S
Sbjct: 132 KPMVDKNSPSMS 143
>05_04_0106 -
18034965-18034975,18035128-18035323,18036320-18036412,
18037219-18037264,18037411-18037538,18037892-18037959,
18038058-18038084,18038181-18038291,18038404-18038482
Length = 252
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 395 SVSGARNGEMMDTFDFLIKSLSSANNYVSMLTREQL 502
SV GA++ + D FDF++ S S N L +E L
Sbjct: 63 SVDGAKSSSVGDGFDFILLSPSDVNERNKALLQEVL 98
>02_05_1141 -
34388867-34388950,34389139-34389189,34389273-34389384,
34390302-34390489
Length = 144
Score = 27.9 bits (59), Expect = 5.2
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Frame = +2
Query: 296 TDPLF--DDMDPNHNYFLGGRPESVASSNLWNDNSSVSGARNGEMMDTFDFLIKSLSSAN 469
TDP F DD + F E++ S W A+N +M D SLS++
Sbjct: 50 TDPSFTVDDREELRRQFERANLEAMDESAEWRMKYDTEFAKNKQMQDELLKAKASLSAST 109
Query: 470 NYVSMLTREQLSVLRSI 520
S+L ++ + R I
Sbjct: 110 KRFSLLKKDNEVLKRQI 126
>01_07_0139 - 41385823-41386656
Length = 277
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -1
Query: 353 DAPPESSYDLDPYHRIAGQCH*VACSVECLPFR 255
D PPE+ LD R AG + V CS C P+R
Sbjct: 9 DLPPEA---LDDIARRAGALNNVVCSAVCRPWR 38
>01_07_0138 - 41383304-41384458
Length = 384
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -1
Query: 353 DAPPESSYDLDPYHRIAGQCH*VACSVECLPFR 255
D PPE+ LD R AG + V CS C P+R
Sbjct: 8 DLPPEA---LDDIARRAGALNNVVCSAVCRPWR 37
>01_07_0137 - 41381294-41382433
Length = 379
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = -1
Query: 353 DAPPESSYDLDPYHRIAGQCH*VACSVECLPFR 255
D PPE+ LD R AG V CS C P+R
Sbjct: 8 DLPPEA---LDDIARCAGPLDNVVCSAVCRPWR 37
>06_01_0247 +
1863549-1863978,1865001-1865261,1865346-1866221,
1866344-1866813
Length = 678
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +2
Query: 359 SVASSNLWNDNSSVSGARNGEMMDTFDFLIKSLSSANNYVS 481
SV SN W+ S +GE+ D+F F ++ + A Y S
Sbjct: 370 SVEYSNGWDPLSGGGVGSSGEVGDSFRFNLEEVECATQYFS 410
>03_02_0829 -
11599665-11600364,11600853-11601076,11601786-11602000,
11602300-11602377,11602593-11603907
Length = 843
Score = 27.1 bits (57), Expect = 9.1
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = +2
Query: 311 DDMDPNHNYFLGGRPESVASSNLWNDNSSVSGARNGEMMDTF 436
+DM P N + PE VAS L ++N SVS +R E D+F
Sbjct: 271 NDM-PVENTVMNQTPEHVASEKLASEN-SVSFSRKQENSDSF 310
>01_06_0559 + 30235379-30235584,30235679-30235814,30235885-30235938
Length = 131
Score = 27.1 bits (57), Expect = 9.1
Identities = 17/63 (26%), Positives = 27/63 (42%)
Frame = -3
Query: 324 GSISSNSGSVPLSRMFSRMSSISVLFGAGSAALGSCRASKLRRSFPPL*NDGVVAENDPS 145
GS+ +PL +S S+ L G + + C A L + + N VV + +
Sbjct: 47 GSLKIFGIEIPLYANWSFSDSLEYLVGMSAVSAAYCLAQLLLTAHKAVKNAPVVQSRNYA 106
Query: 144 WLL 136
WLL
Sbjct: 107 WLL 109
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,379,492
Number of Sequences: 37544
Number of extensions: 295819
Number of successful extensions: 806
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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