Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332H08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz...   220   1e-58
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz...   219   2e-58
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar...    48   6e-07
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom...    27   2.2  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    25   5.2  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   6.8  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    25   9.0  

>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 192

 Score =  220 bits (537), Expect = 1e-58
 Identities = 103/131 (78%), Positives = 116/131 (88%)
 Frame = +2

Query: 14  PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 193
           P   SKTY  PRRPFE ARLD ELK+ GEYGLRNK E+WRV  TL++IR+AARELLTL+E
Sbjct: 5   PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64

Query: 194 KDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 373
           KDPKRLFEGNA++RRLVR+G+LDE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHH
Sbjct: 65  KDPKRLFEGNAIIRRLVRLGILDESRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHH 124

Query: 374 ARILIRQRHIR 406
           AR+LI QRHIR
Sbjct: 125 ARVLIFQRHIR 135


>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 191

 Score =  219 bits (536), Expect = 2e-58
 Identities = 103/131 (78%), Positives = 116/131 (88%)
 Frame = +2

Query: 14  PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 193
           P   SKTY  PRRPFE ARLD ELK+ GEYGLRNK E+WRV  TL++IR+AARELLTL+E
Sbjct: 5   PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64

Query: 194 KDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 373
           KDPKRLFEGNA++RRLVR+G+LDE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHH
Sbjct: 65  KDPKRLFEGNAIIRRLVRLGILDETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHH 124

Query: 374 ARILIRQRHIR 406
           AR+LI QRHIR
Sbjct: 125 ARVLIFQRHIR 135


>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 48.4 bits (110), Expect = 6e-07
 Identities = 28/110 (25%), Positives = 49/110 (44%)
 Frame = +2

Query: 77  QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGV 256
           +++ ++  Y +  + E  +      + R+ A  L  L+  DP RL   N LL +L  +G+
Sbjct: 28  RDVMVMRRYHISKREEYQKYNIICGKFRQLAHRLSLLDPTDPFRLQYENLLLEKLFDMGI 87

Query: 257 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIR 406
           L  K    D      +     RRL   + K  +++ +  A  LI Q H+R
Sbjct: 88  LPSKSKMSDIENKANVSAICRRRLPVIMCKLRMSQVVSEATRLIEQGHVR 137


>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +2

Query: 272 MKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 403
           +++D  L + +E FL++   TQ+    +A  I    + I Q H+
Sbjct: 132 VRMDGALWMAVEQFLQQEFDTQILPCLIAPEILLEFLKIWQNHV 175


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = +1

Query: 301  D*GLLGASSADAGVQSWPGEVHPSCQNFDP 390
            D GLLGA+S   GVQS PG   P      P
Sbjct: 1521 DYGLLGAASPYKGVQS-PGYTSPFSSAMSP 1549


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = +2

Query: 131  RVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGL 298
            R++YT  R+R  AR+ LT        LF   + L+    + +L++KQ +   +L L
Sbjct: 1566 RLEYTALRLRSYARKTLT-NSASQNALF---SFLKANFDVALLEQKQTETSNLLRL 1617


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -3

Query: 138 LTRHTSRLLRRPYSPMIFNSWSRRAFSKGRRGVTYV 31
           LT H+  + +     +   +WS + F   R GVT+V
Sbjct: 433 LTVHSDHITQGMVRALSTGNWSLKRFKMERAGVTHV 468


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,061,385
Number of Sequences: 5004
Number of extensions: 41115
Number of successful extensions: 108
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)