Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332H07f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomy...    27   1.3  
SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   5.2  
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    25   6.8  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    25   6.8  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    25   9.0  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    25   9.0  

>SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 321

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 434 YLLQYKLNIQEGDDLFPKDSENKFI 508
           YL+ + ++ + G+D FPKD +   I
Sbjct: 115 YLIHWPVSFKTGEDKFPKDKDGNLI 139


>SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 202

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 308 KGRFCFSFDVSPVGRIPFVCFKFILYKSLVLL 213
           K RF F   ++ + RI   C K +   SLVLL
Sbjct: 134 KNRFFFMSSINALIRISRNCIKLLFKNSLVLL 165


>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 431 SYLLQYKLNIQEGDDLFPKDSEN 499
           SY++    N+++GD  FP+ S+N
Sbjct: 134 SYIIHVYQNLKDGDYEFPEPSQN 156


>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1205

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
 Frame = -2

Query: 211  LSIEVLRSLPG----QLVYNKINIYPMTHPQCKHAL 116
            L  E+LR +P     + ++NKI I P    Q +HA+
Sbjct: 1073 LPYEILRPIPSIDEKKRIFNKIFITPKMESQIEHAI 1108


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -2

Query: 262 FLLFVLSLFYTKV*FFYLSIEVLRSLPGQLVYNKINIYPMTHPQCKHAL 116
           FLLFV +L      +FY++   L+++P Q  Y       ++   C+ +L
Sbjct: 445 FLLFVFTLSTLIPIYFYVAFYYLQNIPIQKKYESYRCLFISGTICQWSL 493


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -1

Query: 365 GPIWLILVLNYLWKSREGLKGRFC 294
           GPIW +   N  W+SRE      C
Sbjct: 918 GPIWQLKKENNYWESRENSTWSSC 941


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,055,046
Number of Sequences: 5004
Number of extensions: 39483
Number of successful extensions: 82
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)