Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332H07f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0303 - 2171796-2172611,2173133-2174062,2174659-2175132,217...    33   0.18 
12_01_1019 - 10398880-10399314,10399401-10399481,10399560-103996...    27   9.1  
02_05_1225 + 35060642-35060815,35061254-35061802,35062284-350623...    27   9.1  

>07_01_0303 -
           2171796-2172611,2173133-2174062,2174659-2175132,
           2175569-2175609,2176298-2176337
          Length = 766

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 492 ESFGNRSSPSWIFNLYCNR*LHLSLYIKNNCCS 394
           + FG     +W+  L+CNR   +  Y+KNN C+
Sbjct: 230 DKFGLHGRSAWLNMLFCNRHKWVPTYVKNNFCA 262


>12_01_1019 -
           10398880-10399314,10399401-10399481,10399560-10399652,
           10399784-10399999,10403837-10403935,10404244-10404867,
           10404946-10405033,10405167-10405430,10406437-10406504
          Length = 655

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 202 EVLRSLPGQLVYNKINIYPMTHPQCKHALTN 110
           E+L+  PGQ V+   N  P   PQ +H  T+
Sbjct: 347 EILQMAPGQKVWPPRNSQPSNCPQTQHVSTS 377


>02_05_1225 +
           35060642-35060815,35061254-35061802,35062284-35062348,
           35062417-35062957,35063321-35064610
          Length = 872

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = +1

Query: 265 RPTGDTSKEKQNLPFKPSLDFHK*FKTKISQIGPAALEF*RD 390
           +P   T   +    F P L FH+  K KI    PAA    RD
Sbjct: 164 QPNNSTRPSQSKSRFSPMLTFHRRVKNKIGLEEPAAGSCSRD 205


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,758,667
Number of Sequences: 37544
Number of extensions: 230330
Number of successful extensions: 443
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)