Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332H07f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73975-3|CAA98277.2|  269|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z70781-8|CAA94836.2|  269|Caenorhabditis elegans Hypothetical pr...    28   3.5  
AF067618-2|AAC19195.1|  920|Caenorhabditis elegans Nuclear hormo...    28   4.7  
U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily as...    27   8.1  
AF022978-3|AAG24182.2|  403|Caenorhabditis elegans Hypothetical ...    27   8.1  
AF016671-5|AAB66112.2| 1251|Caenorhabditis elegans Adaptin or ad...    27   8.1  

>Z73975-3|CAA98277.2|  269|Caenorhabditis elegans Hypothetical
           protein F57A8.1 protein.
          Length = 269

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 262 IRPTGDTSKEKQNLPFKPSLDFHK*FKTKISQIGPAA 372
           + P     K  +    +PSLDF K  +T+I +I P++
Sbjct: 216 LMPPAPAPKRGRRNSHRPSLDFEKMVQTRIEEIAPSS 252


>Z70781-8|CAA94836.2|  269|Caenorhabditis elegans Hypothetical
           protein F57A8.1 protein.
          Length = 269

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 262 IRPTGDTSKEKQNLPFKPSLDFHK*FKTKISQIGPAA 372
           + P     K  +    +PSLDF K  +T+I +I P++
Sbjct: 216 LMPPAPAPKRGRRNSHRPSLDFEKMVQTRIEEIAPSS 252


>AF067618-2|AAC19195.1|  920|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 266 protein.
          Length = 920

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 232 YKINLKQTKGIRPTGDTSKEKQNLPFKPSLDFHK 333
           + I+++  K +   G   KE  N+PF    DF K
Sbjct: 632 FMISVRTEKNLSQIGSIYKEVSNIPFSMQFDFRK 665


>U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 77 protein.
          Length = 1004

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -1

Query: 362 PIWLILVLNYLWKSREGLKGRFCFSFDVSPVGRIPFVCFKF 240
           P +L+L  +YLW  R    G+    FD++   RIP    KF
Sbjct: 594 PRYLVLFTDYLWICRVSSSGQ----FDINRSYRIPLEYMKF 630


>AF022978-3|AAG24182.2|  403|Caenorhabditis elegans Hypothetical
           protein T01G6.6 protein.
          Length = 403

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -3

Query: 411 KNNCCSLVSLKLESSW-TDLANFGLELFVE 325
           KN+C  L + +L+ SW TD  N  ++ F+E
Sbjct: 255 KNSCLDLKTCQLDVSWCTDYPNEQIQFFLE 284


>AF016671-5|AAB66112.2| 1251|Caenorhabditis elegans Adaptin or
           adaptin-related proteinprotein 5, isoform a protein.
          Length = 1251

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +1

Query: 208 TNKRTKLL-YKINLKQTKGIRPTGDTSKEKQNLP 306
           T KR  LL YKI LK    +RPT    KEK   P
Sbjct: 162 TRKRAVLLLYKIFLKYPDALRPTFPRLKEKLEDP 195


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,319,345
Number of Sequences: 27780
Number of extensions: 217349
Number of successful extensions: 434
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)