Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332H07f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   3.3  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   4.4  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   7.7  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   7.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   7.7  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   7.7  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +1

Query: 160 FYCILADPADFVVLQ*TNKRTKLLYKINL 246
           FY    +P   +V   T +R  L Y +NL
Sbjct: 215 FYICCEEPYPDIVFNITLRRKTLFYTVNL 243


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +3

Query: 333 IIQDQN*PNRSSCSRVLARLTNSNYFLY 416
           +I D+N P+   CS     +   N  LY
Sbjct: 194 LIPDKNDPDSKECSNQEYEIMKDNLLLY 221


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/22 (27%), Positives = 13/22 (59%)
 Frame = -2

Query: 163 KINIYPMTHPQCKHALTNCLHD 98
           ++NI+P   P C  A+ +  ++
Sbjct: 189 RLNIFPFDDPLCSFAIESISYE 210


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/22 (27%), Positives = 13/22 (59%)
 Frame = -2

Query: 163 KINIYPMTHPQCKHALTNCLHD 98
           ++NI+P   P C  A+ +  ++
Sbjct: 189 RLNIFPFDDPLCSFAIESISYE 210


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/22 (27%), Positives = 13/22 (59%)
 Frame = -2

Query: 163 KINIYPMTHPQCKHALTNCLHD 98
           ++NI+P   P C  A+ +  ++
Sbjct: 240 RLNIFPFDDPLCSFAIESISYE 261


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/22 (27%), Positives = 13/22 (59%)
 Frame = -2

Query: 163 KINIYPMTHPQCKHALTNCLHD 98
           ++NI+P   P C  A+ +  ++
Sbjct: 189 RLNIFPFDDPLCSFAIESISYE 210


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,981
Number of Sequences: 438
Number of extensions: 2752
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)