Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332H04f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    53   3e-08
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch...    41   1e-04
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    39   4e-04
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    39   5e-04
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    38   7e-04
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    36   0.005
SPAC3C7.10 |pex13||peroxin-13|Schizosaccharomyces pombe|chr 1|||...    35   0.006
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi...    35   0.008
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po...    33   0.020
SPCC24B10.13 |skb5||Shk1 kinase binding protein 5|Schizosaccharo...    33   0.020
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    31   0.079
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo...    29   0.56 
SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual           28   0.73 
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce...    28   0.97 
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ...    26   3.9  
SPAC3H5.04 |aar2||U5 snRNP-associated protein Aar2|Schizosacchar...    25   6.8  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   6.8  
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    25   9.0  

>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 52.8 bits (121), Expect = 3e-08
 Identities = 25/60 (41%), Positives = 34/60 (56%)
 Frame = +3

Query: 231  EEDDPQLFVALYDFQAGGENQLTLKKGEQVRIMSYNKSGEWCEAHTLTGAVGWVPSNYVT 410
            E +   L++ALYDF     N++T+KK E + I+    SG W       GA GWVP+ YVT
Sbjct: 1104 EVEKKDLYLALYDFAGRSPNEMTIKKDEIIEIVQKEPSGWWLALK--NGAEGWVPATYVT 1161


>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 19/61 (31%), Positives = 33/61 (54%)
 Frame = +3

Query: 234 EDDPQLFVALYDFQAGGENQLTLKKGEQVRIMSYNKSGEWCEAHTLTGAVGWVPSNYVTP 413
           + D     ALY + A  + +L++++G+ +++ + N    W E   L G  G  P+NYVT 
Sbjct: 583 DGDSSYVKALYAYTAQSDMELSIQEGDIIQVTNRNAGNGWSEG-ILNGVTGQFPANYVTD 641

Query: 414 V 416
           V
Sbjct: 642 V 642


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 39.1 bits (87), Expect = 4e-04
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
 Frame = +3

Query: 264 YDFQAGGENQLTLKKGEQVRIMSYNKSGEWC-----EAHTLTGAVGWVPSNYVTPVNSLE 428
           Y F+   EN+L LKKG+ + ++     G W      E    TG  G  PSNY  P +  +
Sbjct: 430 YSFEPETENELKLKKGDLLLVLKEIDEGWWVGEKLGEDGVFTGNTGMFPSNYCVPAHPWD 489

Query: 429 K 431
           K
Sbjct: 490 K 490


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 38.7 bits (86), Expect = 5e-04
 Identities = 17/51 (33%), Positives = 29/51 (56%)
 Frame = +3

Query: 255 VALYDFQAGGENQLTLKKGEQVRIMSYNKSGEWCEAHTLTGAVGWVPSNYV 407
           + +YD+    EN++ L + EQ++I+ +   G W   ++  G  G  PSNYV
Sbjct: 731 IVIYDYSPEEENEIELVENEQIQILEFVDDGWWLGENS-KGQQGLFPSNYV 780



 Score = 27.9 bits (59), Expect = 0.97
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +3

Query: 258 ALYDFQAGGENQLTLKKGEQVRIMSYNKSGEW-CEAHTLTGAVGWVPSNYVTPV 416
           A+YD+QA  +N+L+  + E +  +       W  E H   G  G  PSNYV  +
Sbjct: 807 AIYDYQAQEDNELSFFEDEIIANVDCVDPNWWEGECH---GHRGLFPSNYVEEI 857


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 38.3 bits (85), Expect = 7e-04
 Identities = 19/51 (37%), Positives = 31/51 (60%)
 Frame = +3

Query: 261 LYDFQAGGENQLTLKKGEQVRIMSYNKSGEWCEAHTLTGAVGWVPSNYVTP 413
           LYDF A   ++LT+K   +V I++   S +W +  ++ G  G VPSN++ P
Sbjct: 516 LYDFIAEAADELTVKANMRVVIVNDTASSDWWKC-SVDGKEGVVPSNFIKP 565


>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 35.5 bits (78), Expect = 0.005
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +3

Query: 255 VALYDFQAGGENQLTLKKGEQVRIMS-YNKSGEWCEAHTLTGAVGWVPSNYV 407
           VALYD+ A     L+   G+++ ++S  +   EW     L GA G  P NYV
Sbjct: 413 VALYDYAAQAAGDLSFHAGDRIEVVSRTDNQNEWWIGR-LNGAQGQFPGNYV 463


>SPAC3C7.10 |pex13||peroxin-13|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 35.1 bits (77), Expect = 0.006
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
 Frame = +3

Query: 237 DDPQLFVALYDFQAGGEN-QLTLKKGEQVRIMSYNKSG----EWCEAHTLTGAVGWVPSN 401
           D  +   A Y+F +     +++LKKG+ + I+S   +     EW +    +G  GW PSN
Sbjct: 222 DSLEFCKADYEFMSRDPGVEMSLKKGDIIAILSKTDTQGNPCEWWQGRKRSGETGWFPSN 281

Query: 402 YVTPVN 419
           Y + ++
Sbjct: 282 YCSIIS 287


>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
           Tea4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 34.7 bits (76), Expect = 0.008
 Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
 Frame = +3

Query: 225 HHEEDDPQLFVALYDFQAGGENQLTLKKGEQVRIMSYNKSGEWCEAHTLTGAVGWVPSNY 404
           H E  D     A+  F+A  E Q+   KG+ + ++  + S  W        A+G++P+ Y
Sbjct: 114 HEEVIDCNFVHAIRGFEATVEGQVDATKGDMMILLDDSNSYWWLVKMCKNLAIGYLPAEY 173

Query: 405 V-TPVNSLEKHSWYHGPISRNAAE 473
           + TP   L + + Y    + N+ +
Sbjct: 174 IETPSERLARLNKYKNSETSNSQQ 197


>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 373

 Score = 33.5 bits (73), Expect = 0.020
 Identities = 19/53 (35%), Positives = 30/53 (56%)
 Frame = +3

Query: 258 ALYDFQAGGENQLTLKKGEQVRIMSYNKSGEWCEAHTLTGAVGWVPSNYVTPV 416
           ALYDF A  + +L+ KKG+ + ++  +   +W +  +   AVG  P NYV  V
Sbjct: 222 ALYDFAATEQGELSFKKGDIILVLE-SVYKDWWKG-SCKNAVGIFPVNYVQRV 272


>SPCC24B10.13 |skb5||Shk1 kinase binding protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 140

 Score = 33.5 bits (73), Expect = 0.020
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = +3

Query: 255 VALYDFQAGGENQLTLKKGEQVRIMSYNKSGEWCEAH-TLTGAVGWVPSNYV 407
           VALYDF+   +N+L    G+++ I+S +  G W  A+   +G  G VP  +V
Sbjct: 86  VALYDFEPLHDNELGFTTGQRLCILSESSDG-WLIAYDDASGRSGLVPETFV 136


>SPAC20G8.05c |cdc15||cell division control protein
            Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 31.5 bits (68), Expect = 0.079
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = +3

Query: 255  VALYDFQAGGENQLTLKKGEQVRIMSYNKSGEWCE--AHTLTGAVGWVPSNYVTPV 416
            +ALYD+QA    +++ +KG+ + ++   + G W     +      G  PSN+V  V
Sbjct: 872  IALYDYQAQIPEEISFQKGDTLMVLRTQEDGWWDGEIINVPNSKRGLFPSNFVQTV 927


>SPBC11C11.02 |imp2||contractile ring protein
           Imp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 670

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +3

Query: 258 ALYDFQAGGENQLTLKKGEQVRIMSYNKSGEW 353
           ALYD+ A    +++ +KG+ + ++   + G W
Sbjct: 614 ALYDYDAAIPEEISFRKGDTIAVLKLYEDGWW 645


>SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +3

Query: 258 ALYDFQAGGENQLTLKKGEQVRIMSYNKSGEW--CEAHTLTGAVGWVPSNYV 407
           ALY ++A   +++ L   + + +++  K G W         G +G  PSNY+
Sbjct: 359 ALYAYKATLPSEIDLNVDDTLVVLNRQKDGWWKGLVVSPTVGRIGLFPSNYI 410


>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = +3

Query: 258 ALYDFQAGGENQLTLKKGEQVRIMSYNKSGEWCE-AHTLTGAVGWVPSNYVTPVNSLEK 431
           ALYD+ A    +++  KG+   ++       W E  +   G  G+VP ++   +    K
Sbjct: 31  ALYDYTARKATEVSFAKGDFFHVIGRENDKAWYEVCNPAAGTRGFVPVSHFEEIGKTVK 89


>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 308

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +3

Query: 15 ASMRSARSKPRVPKDPRMLGSNIFTEHS 98
          +SMRS      V KD R LG+ I  EHS
Sbjct: 16 SSMRSIVFSNYVAKDTRRLGATIDIEHS 43


>SPAC3H5.04 |aar2||U5 snRNP-associated protein
           Aar2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 346

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 5/56 (8%)
 Frame = -1

Query: 200 PSVSGVERQRSGWRGG-----LVGQVWDVRQRSALQQRLAMFSEYVGAEHAGVLRH 48
           PS +G ER +           LV  VW+    SAL +    F  Y    H G L H
Sbjct: 161 PSATGPERSKQAIDKSFLFQRLVQSVWNDNPISALAELSISFLSYSILSHYGALEH 216


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +1

Query: 397 ATTSLQSTVSRSIHGTMGRFPATRRSTSSRLGSMAASWSA 516
           ++T+  S  S S + T    P T  +TSS L S AAS SA
Sbjct: 152 SSTTSSSLASSSTNSTTSATP-TSSATSSSLSSTAASNSA 190


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 405 VTPVNSLEKHSWYHGPISRNAAEYLLSSG 491
           VTPV +  K  WY   I+R   +  L  G
Sbjct: 209 VTPVETAIKSEWYQQQINRTDVDLFLLIG 237


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,977,384
Number of Sequences: 5004
Number of extensions: 34489
Number of successful extensions: 128
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)