Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332H04f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0473 + 8745721-8745994,8746083-8746090,8746232-8746324,874...    38   0.005
06_01_0332 - 2398683-2399316,2399933-2399983,2400455-2400528,240...    33   0.18 
05_06_0276 + 26878732-26879574,26879920-26880387,26880800-268810...    31   0.56 
01_01_1195 - 9567023-9567789,9567871-9568120                           31   0.56 
10_02_0054 + 4612464-4612823                                           29   2.3  
05_06_0214 - 26425100-26425922,26426008-26426058,26426183-264262...    29   3.0  
10_08_0441 + 17936209-17936428,17936896-17937116,17938250-17938864     28   4.0  
03_02_0565 - 9484045-9484335,9484621-9484686,9484790-9484867,948...    28   5.2  
03_02_0175 + 6146637-6146909                                           28   5.2  
02_05_0143 + 26251401-26253734,26254658-26254810,26254951-26256783     28   5.2  
02_02_0619 - 12205718-12205845,12205941-12206142,12207240-122073...    28   5.2  
11_01_0059 - 444991-446908,447595-448218,448431-448861,450974-45...    27   6.9  
10_05_0097 + 9145478-9145777,9146590-9146785,9146949-9147193           27   6.9  
05_06_0008 - 24824823-24825052,24825584-24825857,24825996-248261...    27   6.9  
09_04_0561 + 18530371-18530411,18532398-18532857                       27   9.1  
05_01_0471 - 3751497-3751522,3751760-3751800,3752466-3752507,375...    27   9.1  
01_06_0794 + 32050413-32050523,32050663-32051391                       27   9.1  
01_06_0416 - 29195666-29196946                                         27   9.1  

>03_02_0473 + 8745721-8745994,8746083-8746090,8746232-8746324,
            8746665-8746893,8747314-8747420,8747560-8747622,
            8747883-8747983,8748996-8749090,8749330-8749350,
            8749987-8750082,8750188-8750308,8750415-8750570,
            8750679-8750869,8751207-8751478,8751853-8751954,
            8752006-8752038,8752132-8752308,8752397-8752466,
            8752512-8752585,8752667-8752908,8752983-8753129,
            8753526-8753751,8753893-8753970,8754378-8754521,
            8754829-8755008,8755335-8755394,8755484-8755523,
            8758653-8759137
          Length = 1294

 Score = 37.9 bits (84), Expect = 0.005
 Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 4/39 (10%)
 Frame = +3

Query: 222  AHHEED----DPQLFVALYDFQAGGENQLTLKKGEQVRI 326
            +H +ED    +PQ   ALYDF AGG+++L+L  GE V I
Sbjct: 1073 SHEDEDRSSGNPQSGKALYDFTAGGDDELSLTAGEDVEI 1111


>06_01_0332 -
           2398683-2399316,2399933-2399983,2400455-2400528,
           2400685-2400782,2400874-2400956,2401323-2401582
          Length = 399

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = +3

Query: 279 GGENQLTLKKGEQVRIMSYNKSGEWCEAHTLTGAVGWVPSNYVT-PVNSLEKHSWYHGPI 455
           G  N    KKG+QV + +YN+      A+ L     W P+ Y   PV   EK       +
Sbjct: 102 GTWNPTQKKKGKQVYLGAYNEEDAAARAYDLAALKYWGPTTYTNFPVADYEKELKLMQGV 161

Query: 456 SRNAAEYLLS 485
           S+   EYL S
Sbjct: 162 SKE--EYLAS 169


>05_06_0276 +
           26878732-26879574,26879920-26880387,26880800-26881021,
           26881153-26881278,26881309-26881573,26881719-26881936
          Length = 713

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 9/79 (11%)
 Frame = +2

Query: 224 PSRRGRSPAVRSPL--------RFPGGR-GEPAHAQERRAGAHHELQQERRVVRSPHADW 376
           P+ R RSP  RSP+        R P  R G P  +  R  G   +  + +  VRSP   W
Sbjct: 37  PAARSRSPRRRSPVKSTSSHRERSPVRRNGSPRRSPVRSIGRSPQRDRVKEQVRSPKQSW 96

Query: 377 GRGLGAQQLRHSSQQSREA 433
            R     + R S   S ++
Sbjct: 97  SRSPSPARKRESWSPSPQS 115


>01_01_1195 - 9567023-9567789,9567871-9568120
          Length = 338

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 242 SPAVRSPLRFPGGRGEPAHAQERRAGA 322
           +P+ RS    P GRGEP  A ++R GA
Sbjct: 292 APSARSAFSAPAGRGEPPGAVDQRGGA 318


>10_02_0054 + 4612464-4612823
          Length = 119

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
 Frame = +2

Query: 260 PLRFPGGRGEPAHAQERRAGAHHELQ--QERRVVRSPHADWGRGLGAQQLRHSSQQSREA 433
           PLR P G G           A ++L+  Q RR  R+ H  WG G  A  L   +    + 
Sbjct: 39  PLRLPSGSGRRQLRLSSNVPAGNQLRRRQLRREDRARHYVWGHGDSAHLLGGGAIAIPDV 98

Query: 434 FMVPWAD 454
           F+V   D
Sbjct: 99  FLVGGLD 105


>05_06_0214 -
           26425100-26425922,26426008-26426058,26426183-26426256,
           26426344-26426441,26426547-26426671,26426724-26426957,
           26426992-26427037,26427101-26427152,26427331-26427367,
           26427521-26427637,26428287-26428352,26428439-26428518,
           26429102-26429311,26429650-26429739,26430093-26430182,
           26430280-26430411,26430876-26431094,26431203-26431286,
           26431543-26431656,26431857-26431914,26432535-26432602,
           26432847-26432962,26433495-26433574,26433839-26433912
          Length = 1045

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +3

Query: 288 NQLTLKKGEQVRIMSYNKSGEWCEAHTLTGAVGWVPSNYVT-PVNSLEK 431
           N    KKG+QV + +Y++      A+ L     W P+ Y   PV   EK
Sbjct: 688 NPTQRKKGKQVYLGAYDEEEAAARAYDLAALKYWGPTTYTNFPVMDYEK 736


>10_08_0441 + 17936209-17936428,17936896-17937116,17938250-17938864
          Length = 351

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/63 (23%), Positives = 26/63 (41%)
 Frame = +2

Query: 320 AHHELQQERRVVRSPHADWGRGLGAQQLRHSSQQSREAFMVPWADFPQRGGVPPLVWDQW 499
           A  + + ER+V   P  DW   L A   RH  +     +   +  F +   +PP+ +   
Sbjct: 26  ARFKEEYERKVAEHPDVDWSDEL-AVDARHYRESWERIYARAYGPFDKSTSIPPMRYTAE 84

Query: 500 QLP 508
            +P
Sbjct: 85  PVP 87


>03_02_0565 -
           9484045-9484335,9484621-9484686,9484790-9484867,
           9485005-9485157,9485271-9485356,9485445-9485551,
           9485685-9485752,9485890-9485912,9487627-9487732,
           9487772-9487899,9487989-9488065,9488126-9488131,
           9488206-9488264
          Length = 415

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 130 TSQTCPTRPPRHPLRCRSTP 189
           T+ T  T+PPRH ++C + P
Sbjct: 246 TATTATTQPPRHGVKCHAKP 265


>03_02_0175 + 6146637-6146909
          Length = 90

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -1

Query: 200 PSVSGVERQRSGWRGGLVGQVWDVRQRSALQQRLAMFSEYVGAEHA 63
           P+V   +R+R G RGG  G+ W  R+  A ++R        G E A
Sbjct: 40  PAVEARQRKRCGRRGG--GRGWRRRRMEAKRERFGEGKRIAGDESA 83


>02_05_0143 + 26251401-26253734,26254658-26254810,26254951-26256783
          Length = 1439

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +2

Query: 206 EGESFGPSRRGRSP-AVRSPLRFPGGRGEPAHAQERR 313
           +G   G   R RSP A  +  R  GGR  P+ AQE R
Sbjct: 199 DGNGAGGRARARSPVAAAAKQRKRGGREAPSRAQESR 235


>02_02_0619 -
           12205718-12205845,12205941-12206142,12207240-12207315,
           12208073-12208278
          Length = 203

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 6/93 (6%)
 Frame = +3

Query: 186 SANRWTSKENLLAHHEEDDPQLFVALYDFQAGGENQLTLKKGEQVRIMSYNKSGEW---- 353
           S+++ +   +L+   EED    F AL   +  G      +KG  V      + G W    
Sbjct: 29  SSSKRSEPVDLVKEEEEDGEDWFDAL--LRKLGHPFTVDEKGRPVDDADDREKGIWNASM 86

Query: 354 --CEAHTLTGAVGWVPSNYVTPVNSLEKHSWYH 446
               A  ++     VP+N V      EK  WYH
Sbjct: 87  VYMRAQNMSSEYDMVPNNLVLYPMMFEKRRWYH 119


>11_01_0059 -
           444991-446908,447595-448218,448431-448861,450974-452293
          Length = 1430

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -3

Query: 84  ICWSRACGGPSAPVACCAPNAWTRR 10
           +C  RA         CCAP AW RR
Sbjct: 768 MCGGRATAADYGKWLCCAPCAWRRR 792


>10_05_0097 + 9145478-9145777,9146590-9146785,9146949-9147193
          Length = 246

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +2

Query: 203 LEGESFGPSRRGRSPAVRSP-LRFPGGRGEPAHAQERRAGAHHELQQERRVVRSPHADWG 379
           LEG+   P+ +    A     L  PGG+ EP+     RA     +++ R V++    D+ 
Sbjct: 52  LEGDGDDPTEQSIIEANDDTVLSLPGGKAEPSTPSAGRADCWQHIEKIRLVMKEMFQDYC 111

Query: 380 R 382
           R
Sbjct: 112 R 112


>05_06_0008 -
           24824823-24825052,24825584-24825857,24825996-24826141,
           24826261-24826485,24826678-24826918
          Length = 371

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 372 TGAVGWVPSNYVTPVNSLEKHSWYHGP 452
           + AV W   +Y   +NS     W HGP
Sbjct: 333 SAAVSWDGVHYTEAINSYIAQGWLHGP 359


>09_04_0561 + 18530371-18530411,18532398-18532857
          Length = 166

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 275 GGRGEPAHAQERRAGAHHELQQERRVVRSPHADWG 379
           G R    H + R   AH+E  + +  + S HAD G
Sbjct: 29  GSRTSRCHRKRRNRDAHNEEDESQVPIDSSHADGG 63


>05_01_0471 -
           3751497-3751522,3751760-3751800,3752466-3752507,
           3753249-3753310,3753398-3753584,3753692-3753826,
           3753872-3753948,3754005-3754076,3754389-3754588,
           3754675-3755020,3755463-3755519,3755655-3757433,
           3757539-3757720,3757943-3758072
          Length = 1111

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = -2

Query: 517 SRTRKLPLIPDERRYSAALREIGPW 443
           S  R+ P+IPD+++ SA+ ++I P+
Sbjct: 176 STKRQAPVIPDQKKGSASPKDINPF 200


>01_06_0794 + 32050413-32050523,32050663-32051391
          Length = 279

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 260 PLRFPGGRGEPAHAQERRAGAHH-ELQQERRVVR 358
           P  F GG G P   + RRA A   ++Q+ +RV+R
Sbjct: 129 PAHFTGGHGWPPATEFRRARAFDLQVQEGKRVLR 162


>01_06_0416 - 29195666-29196946
          Length = 426

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +3

Query: 240 DPQLFVALYD--FQAGGENQLTLKKGEQVRIMSYNKSGEW 353
           DP +F A+ D     GG  QL L +GE   ++  ++SG W
Sbjct: 167 DP-VFAAVGDRVVALGGACQLALGEGEDASVVEVHESGSW 205


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,196,922
Number of Sequences: 37544
Number of extensions: 307168
Number of successful extensions: 1343
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1340
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)