Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332H02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    29   0.32 
SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase Gmh1|Schizosa...    28   0.97 
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc...    25   6.8  

>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = +3

Query: 60   HSSNTQVQGSLKGGMADAQARGPGSTS---SQAQIGFTPYTHGDASHDVQKSPF 212
            H ++T + G + G +A    RG        +   I FT + HGD S  +  +PF
Sbjct: 2331 HVASTLMTGQIVGAVATMIGRGASPNREGPANVFIDFTKWNHGDGSSILASAPF 2384


>SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase
           Gmh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +3

Query: 363 LPFDKIDVYDEKNKNINIETTEKSLD--LLPTESTEIPLTTEHLSYDIPST 509
           +P D+I V+D K   +  ETT  SLD  L+   +T    T  H   + P +
Sbjct: 34  IPHDEISVFDFKLPALQYETTVTSLDNFLIGGSTTLYTATVNHEDLNEPKS 84


>SPBC428.07 |meu6||meiotic chromosome segregation protein
           Meu6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 651

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
 Frame = +3

Query: 336 DKDTVFSNRLPFDKIDVYDEKNKNINIETTEKSLDLLPTESTEIPLTTEHL---SYDIPS 506
           D  +   N    D +D   E     ++E  E   + +PT     P TTE +   S + P+
Sbjct: 348 DTASPIDNETSADPVDTTVEAQ---SVEVPENETNQIPTTEEHFPATTEEVAPASEEKPA 404

Query: 507 TTPLD 521
           T P +
Sbjct: 405 TGPAE 409


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,012,028
Number of Sequences: 5004
Number of extensions: 38225
Number of successful extensions: 103
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)