Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332H02f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0160 - 13423033-13423050,13426060-13426721,13428417-13428663     28   5.2  
01_05_0799 + 25334460-25334994,25335060-25335236,25335325-253354...    27   6.9  

>08_02_0160 - 13423033-13423050,13426060-13426721,13428417-13428663
          Length = 308

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +3

Query: 45  SEGVMHSSNTQVQGSLKGGMADAQARGPGSTSSQAQIGFTPYTH 176
           S+G    S+  VQG    G    Q  GP    + AQ+ F  + H
Sbjct: 166 SQGNQGDSSQGVQGVQGDGAHGVQGEGPNQDGNTAQLQFNNFQH 209


>01_05_0799 +
           25334460-25334994,25335060-25335236,25335325-25335447,
           25335559-25335624,25335717-25336685,25336791-25336912,
           25337156-25337549,25337888-25338009,25338253-25338646,
           25338983-25339104,25339348-25339830,25340291-25340960,
           25341713-25342224,25342484-25342540
          Length = 1581

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
 Frame = +3

Query: 291 YGITYNGGAQAGASLDKDTVFSNRLPFD---KIDVYD---EKNKNINIETTEKS--LDLL 446
           YG TY+   QA + LDK+ V  +  P D   + D Y     K K ++IE  + S  LD +
Sbjct: 182 YGTTYSTVLQATSVLDKEAVDLDD-PVDWLHRNDTYQRQCRKRKVVSIEHDQHSPILDGV 240

Query: 447 PTESTEIPLTTEHLSYDIPST 509
            T+   IP+   H   D+PS+
Sbjct: 241 -TQDESIPVQAVH--QDVPSS 258


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,295,174
Number of Sequences: 37544
Number of extensions: 268531
Number of successful extensions: 793
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)