Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS332H02f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z48334-7|CAB54223.2| 608|Caenorhabditis elegans Hypothetical pr... 29 1.5
U28736-2|AAA68307.1| 620|Caenorhabditis elegans Hypothetical pr... 29 1.5
U40938-2|AAQ65206.1| 463|Caenorhabditis elegans Hypothetical pr... 29 2.7
U40938-1|AAA81695.2| 465|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical pr... 28 3.5
Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical pr... 28 3.5
Z82064-1|CAB61036.1| 1223|Caenorhabditis elegans Hypothetical pr... 28 3.5
AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical ... 28 3.5
AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protei... 28 3.5
AF016854-1|AAB94553.1| 1223|Caenorhabditis elegans HMR-1 protein. 28 3.5
U06933-1|AAA64938.1| 551|Caenorhabditis elegans CeSWAP protein. 27 6.2
>Z48334-7|CAB54223.2| 608|Caenorhabditis elegans Hypothetical
protein F10B5.8 protein.
Length = 608
Score = 29.5 bits (63), Expect = 1.5
Identities = 18/49 (36%), Positives = 30/49 (61%)
Frame = +3
Query: 330 SLDKDTVFSNRLPFDKIDVYDEKNKNINIETTEKSLDLLPTESTEIPLT 476
SLD + S PF VYD++N+ +NI +T +S DL+ ++ +P+T
Sbjct: 470 SLDPNPAKSE-CPFVAELVYDQENERLNIMSTAESEDLIKDKNC-MPIT 516
>U28736-2|AAA68307.1| 620|Caenorhabditis elegans Hypothetical
protein F26A10.2 protein.
Length = 620
Score = 29.5 bits (63), Expect = 1.5
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +3
Query: 336 DKDTVFSNRLPFDKIDVYDEKNKNINIETTEKSLDLLPTESTEIPLTTEHLSYDI 500
D D+V +LP +I+ Y EKNK + + K LPTE + H D+
Sbjct: 241 DFDSVRGQQLPSQQIEDYVEKNKQ-KLFSCRKCRVFLPTEEAYMRHAASHNGEDL 294
>U40938-2|AAQ65206.1| 463|Caenorhabditis elegans Hypothetical
protein D1009.3b protein.
Length = 463
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 417 ETTEKSLDLLPTESTEIPLTTEHLSYDIPSTTP 515
+T +KSLDLL ++T I TT D +T P
Sbjct: 121 KTLKKSLDLLEEDTTTITTTTSQTPDDYDTTEP 153
>U40938-1|AAA81695.2| 465|Caenorhabditis elegans Hypothetical
protein D1009.3a protein.
Length = 465
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 417 ETTEKSLDLLPTESTEIPLTTEHLSYDIPSTTP 515
+T +KSLDLL ++T I TT D +T P
Sbjct: 123 KTLKKSLDLLEEDTTTITTTTSQTPDDYDTTEP 155
>Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical protein
W02B9.1b protein.
Length = 2920
Score = 28.3 bits (60), Expect = 3.5
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +3
Query: 357 NRLPFDKIDVYDEKNKNINIETTE 428
N P+D++ +YD++ NI++ T E
Sbjct: 2891 NAAPYDELRIYDDERDNISVVTLE 2914
>Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical protein
W02B9.1b protein.
Length = 2920
Score = 28.3 bits (60), Expect = 3.5
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +3
Query: 357 NRLPFDKIDVYDEKNKNINIETTE 428
N P+D++ +YD++ NI++ T E
Sbjct: 2891 NAAPYDELRIYDDERDNISVVTLE 2914
>Z82064-1|CAB61036.1| 1223|Caenorhabditis elegans Hypothetical protein
W02B9.1a protein.
Length = 1223
Score = 28.3 bits (60), Expect = 3.5
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +3
Query: 357 NRLPFDKIDVYDEKNKNINIETTE 428
N P+D++ +YD++ NI++ T E
Sbjct: 1194 NAAPYDELRIYDDERDNISVVTLE 1217
>AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical
protein W02B9.1b protein.
Length = 2920
Score = 28.3 bits (60), Expect = 3.5
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +3
Query: 357 NRLPFDKIDVYDEKNKNINIETTE 428
N P+D++ +YD++ NI++ T E
Sbjct: 2891 NAAPYDELRIYDDERDNISVVTLE 2914
>AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protein
protein.
Length = 2920
Score = 28.3 bits (60), Expect = 3.5
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +3
Query: 357 NRLPFDKIDVYDEKNKNINIETTE 428
N P+D++ +YD++ NI++ T E
Sbjct: 2891 NAAPYDELRIYDDERDNISVVTLE 2914
>AF016854-1|AAB94553.1| 1223|Caenorhabditis elegans HMR-1 protein.
Length = 1223
Score = 28.3 bits (60), Expect = 3.5
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +3
Query: 357 NRLPFDKIDVYDEKNKNINIETTE 428
N P+D++ +YD++ NI++ T E
Sbjct: 1194 NAAPYDELRIYDDERDNISVVTLE 1217
>U06933-1|AAA64938.1| 551|Caenorhabditis elegans CeSWAP protein.
Length = 551
Score = 27.5 bits (58), Expect = 6.2
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -3
Query: 408 YFCFFHHKHQFYQMEVY 358
Y+ ++HHK FYQ +Y
Sbjct: 427 YYSYYHHKVSFYQWRMY 443
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,350,131
Number of Sequences: 27780
Number of extensions: 234897
Number of successful extensions: 837
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -