Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS332H02f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   3.3  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   5.8  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   5.8  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   7.7  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 244 LDCAAAVPPPTNGDFCTS*DASP 176
           LDC A   PP N D+ T+ D  P
Sbjct: 50  LDCTATGSPPLNIDWSTA-DGHP 71


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 244 LDCAAAVPPPTNGDFCTS*DASP 176
           LDC A   PP N D+ T+ D  P
Sbjct: 50  LDCTATGSPPLNIDWSTA-DGHP 71


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -3

Query: 192 HEMHLHVYTV*NQSELETKCYLDHELERPPCHLSSYPV-LVYWK 64
           H   L+VY +     ++ K  +  E  R  C ++ YP+  + W+
Sbjct: 482 HSARLNVYGLPFIRHMDKKAIVAGETLRVTCPVAGYPIESIVWE 525


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 12  SETGSILTGSQSEGVMHSSNTQVQGSL 92
           SE G  + G+  EG   S NT+  GS+
Sbjct: 355 SEKGLNILGNIIEGNADSYNTEFYGSI 381


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 12  SETGSILTGSQSEGVMHSSNTQVQGSL 92
           SE G  + G+  EG   S NT+  GS+
Sbjct: 355 SEKGLNILGNIIEGNADSYNTEFYGSI 381


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 342 DTVFSNRLPFDKI 380
           D    NR+PFDKI
Sbjct: 237 DNEIFNRVPFDKI 249


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,994
Number of Sequences: 438
Number of extensions: 2877
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)